PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.177570.1
Common NameCsa_3G702640, LOC101208907
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HD-ZIP
Protein Properties Length: 257aa    MW: 28724.3 Da    PI: 8.5054
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.177570.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.11.1e-16136190256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++++q   Lee F++++++  +++ e A++l+L  rqV vWFqNrRa+ k
  Cucsa.177570.1 136 RKKLRLSRQQSAFLEESFKEHHTLYPKQKLEVARRLNLRPRQVEVWFQNRRARTK 190
                     677889***********************************************98 PP
2HD-ZIP_I/II114.28.2e-37136226192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rls++q+++LEesF+e+++L p++K e+ar+L+l+prqv+vWFqnrRARtk+kq E+++e+Lk+++ +l+++n++L+ke ++L+ +lk
  Cucsa.177570.1 136 RKKLRLSRQQSAFLEESFKEHHTLYPKQKLEVARRLNLRPRQVEVWFQNRRARTKLKQNEVECEYLKKCCATLTQQNTKLQKELQDLK-ALK 226
                     69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.46E-16128193IPR009057Homeodomain-like
PROSITE profilePS5007116.293132192IPR001356Homeobox domain
SMARTSM003894.4E-13134196IPR001356Homeobox domain
CDDcd000862.59E-13136193No hitNo description
PfamPF000463.4E-14136190IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-16141190IPR009057Homeodomain-like
PROSITE patternPS000270167190IPR017970Homeobox, conserved site
SMARTSM003404.8E-16192235IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MELDLRLGND PSPSSHPTPL RFSLSFPSID LQHQAHNHIH QNHLLLHSLN SPPPPSAPAS  60
RPSSPTEGSG GGVFTEVISG ASADGGGEIG GRSSKGIVWS IGKNNREEER KGKSENELEE  120
EEEQEEMDMN MISSGRKKLR LSRQQSAFLE ESFKEHHTLY PKQKLEVARR LNLRPRQVEV  180
WFQNRRARTK LKQNEVECEY LKKCCATLTQ QNTKLQKELQ DLKALKTTHS LFINSPPTTL  240
TLCASCERAV ATPVSR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184192RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818351e-102LN681835.1 Cucumis melo genomic scaffold, anchoredscaffold00064.
GenBankLN7132581e-102LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149612.10.0PREDICTED: homeobox-leucine zipper protein HOX27
TrEMBLA0A0A0LEY40.0A0A0A0LEY4_CUCSA; Uncharacterized protein
STRINGXP_004149612.10.0(Cucumis sativus)
STRINGXP_004161408.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3151522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-53homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]