PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.177010.1
Common NameCsa_3G728060, LOC101213503
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 896aa    MW: 98991.5 Da    PI: 6.5012
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.177010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.21.3e-17316415198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ grlv+pk +ae++   ++++e+  ++++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  Cucsa.177010.1 316 FEKMLSASDAGRIGRLVVPKACAEAYfpPISQPEGLPIRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 408
                     89**************************555566778***************9989999999***9.********************876.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     l +++++
  Cucsa.177010.1 409 LIMGFRK 415
                     7777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.103.3E-4442IPR013088Zinc finger, NHR/GATA-type
Gene3DG3DSA:2.40.330.103.6E-29307420IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-19313415IPR015300DNA-binding pseudobarrel domain
CDDcd100178.84E-22314415No hitNo description
PfamPF023622.5E-15316415IPR003340B3 DNA binding domain
PROSITE profilePS5086311.194316417IPR003340B3 DNA binding domain
SMARTSM010191.3E-19316417IPR003340B3 DNA binding domain
PROSITE profilePS5105013.918580630IPR011124Zinc finger, CW-type
PfamPF074961.0E-10585627IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    Send to blast
MALRTCMNVS CRASSSTEWR KGWALRSGDF ATLCDKCGSA YDQSIFCDIF HLKDSGWREC  60
TSCGKHLHCG CIASKFLMEL HDSGGVNCIS CAKSLGLHTT STSEKLNGLG TSQVQNSGDL  120
QSFLVEDGNN DRITLIQSGN KAEGNELRQS HLSPSNNKNV SLVQMKHEEN CPSVRDVGYV  180
CSSESTQVTN GLNEFAKQEI CKGDSGTKLA YDSLALGCGN SNPLPGVSID EKEASKPSSP  240
LLLGSRSRHL IPKPARSVFN VGLESNTSMV SQLRVARPPA EGRGRNQLLP RYWPKITDQE  300
LQQISGASNS TVVPLFEKML SASDAGRIGR LVVPKACAEA YFPPISQPEG LPIRIQDVKG  360
KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRMDPEGKLI MGFRKASSSS  420
IMQDSHPSAL STSGHSSEFF SSVFENLPLL SGHSSLLQSL KGNMDPQLNL LPGYFNQPGN  480
DTNWQKAEKQ DDQSRECLLL SSMMVPERKR TRNIGSKSKR LHIDCQEALE LRLTWEEVQD  540
LLCPPPTVKP SKFMVEDHEF EEYEEPPVFG KMSIFVVHST RGQEQWAQCD DCSKWRRLPI  600
DVLLPSKWTC LENIWDQSRS SCSTLEELTT RELENILRLN KEFKRQRTLA FSGPIQDHES  660
SGLDALANAA TLGDNGSDPG TASVATTTKH PRHRPGCSCI VCIQPPSGKG KHKPTCMCNV  720
CMTVKRRFKT LMMRKKKRQS EREAEIAQKN QLKWSSREES ELDNTSRHAS LNLDPSANEA  780
QLMTNEPRSQ SNLVETCKDQ LDLNCQPDQE NEVEGVPNRV SMMSLVQIAS LPLETYLKQN  840
GLTSLLPELQ ASSASHAPAQ GTNEMEGAVN DDGCFASAAQ DQESEGEQIC GKDQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-682944232131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1724735KRRFKTLMMRKK
2724737KRRFKTLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651831.10.0PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A0A0LCL40.0A0A0A0LCL4_CUCSA; Uncharacterized protein
STRINGXP_008442317.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110183239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]