PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.176140.1 | ||||||||
Common Name | Csa_3G732480, LOC101215822 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 269aa MW: 30011 Da PI: 9.7562 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.1 | 4e-08 | 21 | 66 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+eE +++ +a +++ + +W ++a++++ g+t +++ ++ Cucsa.176140.1 21 KWTPEENKRFENALALFDIDtpdRWVKVAAMIP-GKTVCDVVKQYRE 66 8*****************99*************.***9999888875 PP | |||||||
2 | Myb_DNA-binding | 47.1 | 5.5e-15 | 127 | 171 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky Cucsa.176140.1 127 PWTEEEHRQFLMGLKKYGKGDWRNISRSFVTTRTPTQVASHAQKY 171 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.62 | 17 | 72 | IPR017884 | SANT domain |
SMART | SM00717 | 2.4E-7 | 18 | 70 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.1E-12 | 20 | 75 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-4 | 21 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.6E-6 | 21 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.36E-7 | 21 | 68 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-13 | 118 | 176 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.02 | 120 | 176 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.08E-17 | 121 | 175 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-17 | 123 | 175 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.6E-13 | 124 | 174 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.58E-11 | 127 | 172 | No hit | No description |
Pfam | PF00249 | 2.1E-12 | 127 | 171 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MKRGIGILSP ATYLRNSGCS KWTPEENKRF ENALALFDID TPDRWVKVAA MIPGKTVCDV 60 VKQYRELVED VSDIEAGLVP VPGYGVGNSF VLEWSSDGGG FAPMYIGAGK RGGCGRPSDQ 120 ERKKGVPWTE EEHRQFLMGL KKYGKGDWRN ISRSFVTTRT PTQVASHAQK YFIRQLTGGK 180 DKRRSSIHDI TTTHLFDNSI NQPGNHDKTS PPSYVGVKMA PLCGISSLRP KLLQDQIFLR 240 SNNFHGCQNV NPYSPNIVFQ GQRDQQYQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-16 | 22 | 84 | 11 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 1e-180 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 1e-180 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004137732.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-90 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A0A0L9Y9 | 0.0 | A0A0A0L9Y9_CUCSA; Uncharacterized protein | ||||
STRING | XP_004163854.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24762 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-99 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.176140.1 |
Entrez Gene | 101215822 |
Publications ? help Back to Top | |||
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