PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.175500.1
Common NameCsa_3G734180, LOC101205887
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 761aa    MW: 85951.3 Da    PI: 5.6288
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.175500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS386.92.4e-1183857561374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+av+++d+++a++lL++++++asp gd  qRla++f+ +L+arla+++s++yk l  ++ts    +++l+a++l+  ++P+ k+s+
  Cucsa.175500.1 385 LRTLLISCAQAVAADDHRNASELLKQVRQHASPFGDGSQRLASCFADGLEARLAGTGSQIYKGLINKRTS---AADVLKAYHLYLAACPFRKISN 476
                     6789************************************************************888888...89******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +t N++I+ a+e+++r+H+iDf+i +G+QWp+L+q L+ R++gpp+lRiTg++ p++g   +e++eetg+rLa +Ae+++vpfe+n+ +ak++e+
  Cucsa.175500.1 477 FTSNRTIMIAAESATRLHVIDFGILYGFQWPTLIQRLSWRKGGPPKLRITGIEFPQPGfrPAERVEETGRRLAAYAETFNVPFEYNA-IAKKWES 570
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L+++++E l+Vn+ ++ ++lldesvs+es+r++vLklv ++sP++++    +  +n++ F++rf eal ++sa+fd+le+ +pre+ er+
  Cucsa.175500.1 571 VTVEDLNIDQDEFLVVNCLYRAKNLLDESVSTESARNTVLKLVHKISPNLFISGIVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDYERM 665
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +Ere++gre+ nv+aceg er+er et+++W+ r+++aGF ++p+  ++ + a   +r  + + + ++e+s +l++gWk+r ++++S W+
  Cucsa.175500.1 666 LLEREIFGREALNVIACEGWERVERPETYKQWQFRIMRAGFVQLPFAPEIFERAVEKVRSSYHRDFLIDEDSRWLLQGWKGRIIYAISTWK 756
                     **************************************************************999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.259359736IPR005202Transcription factor GRAS
PfamPF035148.3E-116385756IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MTSNIVMTPD RELRKSDRYI DNRPFGIQAQ EGTHGRPRFQ NTIFSHNFQE FDCLLPNPSP  60
SNIASSSSIR TSSSNDASHE EDYLEDCDFS DAVLTFINQI LMEEDMEDKT CMLQDSLDLQ  120
AAEKSFYEVL GKKYPPSPEV NRSLANQYTD SLNEELCGDS SNYLSNYSST SYRGDDDPQT  180
LSEDVFQIRS ALGDTISPSS NSSSNSVISG GDGWVDFSNN TIQVPEPNNR SQSIWQFQKG  240
FEEASKFLPG GNKLCLDFEV NGSATQGPDE GTSQIYLKAA RKDQRNVFSP ESRGRKNPHD  300
ENGDLEEERS SKQAAVFAES PLRSKMFDIV LLCSAGEGHE RLVSFRQELH DAKIKSMLQS  360
GQLKVSNGGR GRRKKQSAKK EVVDLRTLLI SCAQAVAADD HRNASELLKQ VRQHASPFGD  420
GSQRLASCFA DGLEARLAGT GSQIYKGLIN KRTSAADVLK AYHLYLAACP FRKISNFTSN  480
RTIMIAAESA TRLHVIDFGI LYGFQWPTLI QRLSWRKGGP PKLRITGIEF PQPGFRPAER  540
VEETGRRLAA YAETFNVPFE YNAIAKKWES VTVEDLNIDQ DEFLVVNCLY RAKNLLDESV  600
STESARNTVL KLVHKISPNL FISGIVNGAY NAPFFVTRFR EALFHFSAIF DMLETVVPRE  660
DYERMLLERE IFGREALNVI ACEGWERVER PETYKQWQFR IMRAGFVQLP FAPEIFERAV  720
EKVRSSYHRD FLIDEDSRWL LQGWKGRIIY AISTWKPSVE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-473747577379Protein SCARECROW
5b3h_D1e-473747577379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137937.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A0A0LA570.0A0A0A0LA57_CUCSA; Uncharacterized protein
STRINGXP_004137937.10.0(Cucumis sativus)
STRINGXP_004156649.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]