PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.174610.1
Common NameCsa_4G124910, LOC101219152
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CO-like
Protein Properties Length: 345aa    MW: 38470.5 Da    PI: 5.0873
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.174610.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.72.7e-091963442
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     +C+ +e+ ++++ C+ +   lC+ C  e+H+       H++vp+
  Cucsa.174610.1 19 VICEACERCPAEFICKADAASLCAACDAEIHSAnplarrHQRVPI 63
                    58******99*********************66899999**9997 PP
2CCT70.54.1e-24275318144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Cucsa.174610.1 275 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 318
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.0E-121663IPR000315B-box-type zinc finger
PROSITE profilePS5011910.6651663IPR000315B-box-type zinc finger
CDDcd000211.93E-101963No hitNo description
PfamPF006431.8E-72063IPR000315B-box-type zinc finger
PfamPF062036.4E-18275317IPR010402CCT domain
PROSITE profilePS5101716.648275317IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MLKTEDEYRG SGGNGWGAVI CEACERCPAE FICKADAASL CAACDAEIHS ANPLARRHQR  60
VPISRGGAMF RSVEEEDEEE AASWLLMNPG KNNDNKNNNN NNNNGMFLLS GEDEEDDEYL  120
KFVEFNGNNE EDDDEFETLK NNNYGGGGDS VVPIDQFEGN KNHDHHLHHH HHEQQQQNHE  180
ILLEQSYGGL VDASEFFHTS SKPSFSYNGF LTHAISVSSM EVGVVPESTA TIMSDISISN  240
MRPPKGTIDL FSGMIAAEPA AASQMPAAQL SPMDREARVL RYREKKKTRK FEKTIRYASR  300
KAYAETRPRI KGRFAKRTDV EVQLDRKYSN PLMPDAGYGI VPSF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818700.0LN681870.1 Cucumis melo genomic scaffold, anchoredscaffold00035.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137263.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-83COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A0A0KY360.0A0A0A0KY36_CUCSA; Uncharacterized protein
STRINGXP_004137263.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.12e-46CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]