PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.174120.1

Common Name

Csa_5G025910, LOC101203643

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HSF

Protein Properties

Length: 397aa MW: 45898.5 Da PI: 4.5355

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.174120.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	103.6	1.6e-32	16	107	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Flkkly++++d++++++isw+++++sf +ld ++f+ ++LpkyFkhsnf+SF+RQLn+YgF+k++++ weF+ + F kg+k+ll++ Cucsa.174120.1 16 FLKKLYDMVDDDSTNSVISWTSSNDSFTILDITHFSLHLLPKYFKHSNFSSFMRQLNIYGFRKIDTDC---------WEFATDGFIKGQKHLLKN 101 9*************************************************************9987.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i r+k+ Cucsa.174120.1 102 IYRRKN 107 *997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.3E-34	6	100	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.36E-31	11	105	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.7E-50	12	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.4E-18	16	39	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	4.9E-28	16	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.4E-18	54	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	55	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.4E-18	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MVKSAAERQG SSVAPFLKKL YDMVDDDSTN SVISWTSSND SFTILDITHF SLHLLPKYFK 60 HSNFSSFMRQ LNIYGFRKID TDCWEFATDG FIKGQKHLLK NIYRRKNIHG TDQRKASQPQ 120 DNSEAQVELP DYSGLWKEVE NLKIDKNAVM QELVKLKQHQ ETSENKLLLL RERLQGMEKN 180 QQQMLSFLVM AVQSPGFLVQ FLQPKEKSWR MADPGNMLEQ ISDDNQVPSN GMIVRYQRPL 240 DELSTTLLPP VTGPGKQQES EPFPDGMKDF FLNSDFMKVL MDEKVCLDNH SQFVLPDVQD 300 VAWEQLLLAN PFSGNSDNGR KVDHERRYTD SEDDELDMET IDTQTHEENS EDFELLIRQM 360 EKCEDFGIQP RLDESYIENS NDVHLLTQQM DYLASD*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MVKSAAERQG SSVAPFLKKL YDMVDDDSTN SVISWTSSND SFTILDITHF SLHLLPKYFK  60
HSNFSSFMRQ LNIYGFRKID TDCWEFATDG FIKGQKHLLK NIYRRKNIHG TDQRKASQPQ  120
DNSEAQVELP DYSGLWKEVE NLKIDKNAVM QELVKLKQHQ ETSENKLLLL RERLQGMEKN  180
QQQMLSFLVM AVQSPGFLVQ FLQPKEKSWR MADPGNMLEQ ISDDNQVPSN GMIVRYQRPL  240
DELSTTLLPP VTGPGKQQES EPFPDGMKDF FLNSDFMKVL MDEKVCLDNH SQFVLPDVQD  300
VAWEQLLLAN PFSGNSDNGR KVDHERRYTD SEDDELDMET IDTQTHEENS EDFELLIRQM  360
EKCEDFGIQP RLDESYIENS NDVHLLTQQM DYLASD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-22	11	105	24	129	Heat shock factor protein 1
5d5v_B	4e-22	11	105	24	129	Heat shock factor protein 1
5d5v_D	4e-22	11	105	24	129	Heat shock factor protein 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681907	0.0	LN681907.1 Cucumis melo genomic scaffold, anchoredscaffold00093.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004142267.1	0.0	PREDICTED: heat stress transcription factor A-8
TrEMBL	A0A0A0KMJ2	0.0	A0A0A0KMJ2_CUCSA; Uncharacterized protein
STRING	XP_004163707.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10419	29	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67970.1	1e-100	heat shock transcription factor A8

Link Out ? help Back to Top
Phytozome	Cucsa.174120.1
Entrez Gene	101203643

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]