PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.168280.1 | ||||||||
Common Name | Csa_2G223670, LOC101211917 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | CPP | ||||||||
Protein Properties | Length: 505aa MW: 54946.8 Da PI: 5.5333 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 52.2 | 1.2e-16 | 209 | 246 | 3 | 40 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkks+Clk+YCeCfaag++C e C+C+dC+Nk Cucsa.168280.1 209 CKRCNCKKSRCLKLYCECFAAGVYCIEPCSCQDCFNKP 246 89**********************************96 PP | |||||||
2 | TCR | 51.9 | 1.5e-16 | 293 | 331 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN Cucsa.168280.1 293 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 331 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 9.1E-19 | 207 | 248 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.548 | 208 | 333 | IPR005172 | CRC domain |
Pfam | PF03638 | 6.2E-12 | 210 | 245 | IPR005172 | CRC domain |
SMART | SM01114 | 7.5E-18 | 293 | 334 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 4.5E-12 | 295 | 331 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 505 aa Download sequence Send to blast |
MDQLLEIFVP EIPTASTPVI PPPETVDSDA GEVVIFHCPI STEAMEEEDE ALFQNDGALA 60 TIEENKPLSN LHSGNMRRRC LDFEMAGNPV SATVEARTGD ASIPASSSSS SSSFRRTLPS 120 IGLHLNALAA TLKHSDSDNI CSDTQPSFPS SSAPIFASNS TSDQLLLASS TPESENPPQE 180 SANLTGEEIS HTNPKNNWQS MENAGVGACK RCNCKKSRCL KLYCECFAAG VYCIEPCSCQ 240 DCFNKPIHEA MVLETRRQIE SRNPLAFAPK VIMNCDLISE LRDDSNKTPA SARHKRGCNC 300 KKSGCLKKYC ECYQGGVGCS INCRCEGCKN AFGRKDESAL LGTEIEQEEE GREHCQKTID 360 VHSDEDRQNP SNAAPSTPLG PNRSLIPFPF QLKRRLPSFL NDESSSRLSV RFKLEKHGIT 420 QTEPKFEKTP CEDVTPETLC NGCPSITGVK SVSPNSKRIT LPLPQADFRP LPSTRIGRKL 480 ILQSIPSFPS LTNQTSGING PSEL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 4e-17 | 212 | 330 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 4e-17 | 212 | 330 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681842 | 1e-177 | LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022. | |||
GenBank | LN713259 | 1e-177 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004145421.1 | 0.0 | PREDICTED: CRC domain-containing protein TSO1 | ||||
Swissprot | Q9LUI3 | 1e-121 | TSO1_ARATH; CRC domain-containing protein TSO1 | ||||
TrEMBL | A0A0A0LNU4 | 0.0 | A0A0A0LNU4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004153179.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004159699.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24563 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G22780.1 | 1e-114 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.168280.1 |
Entrez Gene | 101211917 |