PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.168280.1
Common NameCsa_2G223670, LOC101211917
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CPP
Protein Properties Length: 505aa    MW: 54946.8 Da    PI: 5.5333
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.168280.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR52.21.2e-16209246340
             TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     +k+CnCkks+Clk+YCeCfaag++C e C+C+dC+Nk 
  Cucsa.168280.1 209 CKRCNCKKSRCLKLYCECFAAGVYCIEPCSCQDCFNKP 246
                     89**********************************96 PP

2TCR51.91.5e-16293331139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Cucsa.168280.1 293 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 331
                     589***********************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.1E-19207248IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.548208333IPR005172CRC domain
PfamPF036386.2E-12210245IPR005172CRC domain
SMARTSM011147.5E-18293334IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.5E-12295331IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MDQLLEIFVP EIPTASTPVI PPPETVDSDA GEVVIFHCPI STEAMEEEDE ALFQNDGALA  60
TIEENKPLSN LHSGNMRRRC LDFEMAGNPV SATVEARTGD ASIPASSSSS SSSFRRTLPS  120
IGLHLNALAA TLKHSDSDNI CSDTQPSFPS SSAPIFASNS TSDQLLLASS TPESENPPQE  180
SANLTGEEIS HTNPKNNWQS MENAGVGACK RCNCKKSRCL KLYCECFAAG VYCIEPCSCQ  240
DCFNKPIHEA MVLETRRQIE SRNPLAFAPK VIMNCDLISE LRDDSNKTPA SARHKRGCNC  300
KKSGCLKKYC ECYQGGVGCS INCRCEGCKN AFGRKDESAL LGTEIEQEEE GREHCQKTID  360
VHSDEDRQNP SNAAPSTPLG PNRSLIPFPF QLKRRLPSFL NDESSSRLSV RFKLEKHGIT  420
QTEPKFEKTP CEDVTPETLC NGCPSITGVK SVSPNSKRIT LPLPQADFRP LPSTRIGRKL  480
ILQSIPSFPS LTNQTSGING PSEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1721233014120Protein lin-54 homolog
5fd3_B4e-1721233014120Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818421e-177LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132591e-177LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145421.10.0PREDICTED: CRC domain-containing protein TSO1
SwissprotQ9LUI31e-121TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBLA0A0A0LNU40.0A0A0A0LNU4_CUCSA; Uncharacterized protein
STRINGXP_004153179.10.0(Cucumis sativus)
STRINGXP_004159699.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2456333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-114Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Lu T,Dou Y,Zhang C
    Fuzzy clustering of CPP family in plants with evolution and interaction analyses.
    BMC Bioinformatics, 2013. 14 Suppl 13: p. S10
    [PMID:24268301]
  5. Xie W, et al.
    Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach.
    Front Plant Sci, 2015. 6: p. 829
    [PMID:26528302]
  6. Wang W,Sijacic P,Xu P,Lian H,Liu Z
    Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054
    [PMID:29535223]