PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.167110.4 | ||||||||
Common Name | Csa_1G538230, LOC101211318 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 721aa MW: 79412.5 Da PI: 6.5095 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.1e-18 | 18 | 76 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+++Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Cucsa.167110.4 18 KYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76 6789*****************************************************97 PP | |||||||
2 | START | 170.3 | 1.3e-53 | 166 | 373 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++ +++l vis+g g+++l Cucsa.167110.4 166 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPM-KVAEILKDRLSWFRDCRCVDVLSVISTGngGTIELL 259 68999*****************************************************.8999999999************************** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++ + p+ ss+vRae+lpSg+li+ +++g s +++v+hvdl+ ++++++lr+l+ Cucsa.167110.4 260 YMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTLSTGGPSgppPSSFVRAEMLPSGYLIRACEGG-SLIHIVDHVDLDVWSVPEVLRPLY 353 ***************************************99999888899*******************9.************************ PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s+ + +++t+va+l++ ++ Cucsa.167110.4 354 ESTKILAQRTTVAALRYVRQ 373 ***************99765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.597 | 13 | 77 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.1E-16 | 15 | 81 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.8E-16 | 18 | 76 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.8E-16 | 18 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.58E-16 | 18 | 78 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-18 | 20 | 76 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 9.30E-6 | 70 | 109 | No hit | No description |
PROSITE profile | PS50848 | 25.045 | 156 | 383 | IPR002913 | START domain |
CDD | cd08875 | 5.61E-66 | 160 | 375 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 2.5E-20 | 164 | 354 | IPR023393 | START-like domain |
SMART | SM00234 | 4.8E-50 | 165 | 374 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.57E-35 | 166 | 376 | No hit | No description |
Pfam | PF01852 | 5.6E-51 | 166 | 373 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.55E-5 | 413 | 496 | No hit | No description |
SuperFamily | SSF55961 | 7.55E-5 | 524 | 598 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 721 aa Download sequence Send to blast |
MALVMHRDSL NKQMDTSKYV RYTPEQVDAL ERVYAECPKP SSLRRQQLIR ECPILSNIEP 60 KQIKVWFQNR RCREKQRKEA SRLQTVNRKL TAMNKLLMEE NDRLQTQVSR LVYENGYMRQ 120 QLHTASGTTT DNSCESVVMS GQQHQQQNPT KHTQKDANNP AGLLAIAEET LAEFLSKATG 180 TAVDWVQMIG MKPGPDSIGI VAVSRNCNGV AARACGLVSL EPMKVAEILK DRLSWFRDCR 240 CVDVLSVIST GNGGTIELLY MQTYAPTTLA AARDFWTLRY TTSLEDGSLV ICERSLTLST 300 GGPSGPPPSS FVRAEMLPSG YLIRACEGGS LIHIVDHVDL DVWSVPEVLR PLYESTKILA 360 QRTTVAALRY VRQIAQEASG EVQLGGGRQP AVLRTFSQRL CRGFNDAVNG FVDDGWSLMD 420 SDGVEDVTVV INSSPNKFLG SQYNTSLYPT FGGVLCAKAS MLLQNVPPAL LVRFLREHRS 480 EWADYGVDAY SAACLKASAY AVPCARPGGF PGGQVILPLA HTVENEEFLE VVRLEGHAMF 540 PEEAALGGRD MYLLQLCSGV DENTVGACAQ LVFAPIDESF ADDAPLLPSG FRVIPLESKA 600 EMPGATRTLD LASTLEVRPG TNRPGCETDV TNYNLRSVLT IAFQFTFENH MRDSVAAMAR 660 QYVRTVVGSV QRVAMAIAPS QLGSQIGPKS LPASPEALTL AQWITRSYRY DFYLYHVHSE 720 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004135550.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-14-like | ||||
Swissprot | A2XK30 | 0.0 | HOX32_ORYSI; Homeobox-leucine zipper protein HOX32 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | A0A0A0LVI5 | 0.0 | A0A0A0LVI5_CUCSA; Uncharacterized protein | ||||
STRING | XP_004158070.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.167110.4 |
Entrez Gene | 101211318 |
Publications ? help Back to Top | |||
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