PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.167110.4
Common NameCsa_1G538230, LOC101211318
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HD-ZIP
Protein Properties Length: 721aa    MW: 79412.5 Da    PI: 6.5095
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.167110.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-181876357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+++Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Cucsa.167110.4 18 KYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                    6789*****************************************************97 PP

2START170.31.3e-531663732205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++ +++l vis+g  g+++l 
  Cucsa.167110.4 166 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPM-KVAEILKDRLSWFRDCRCVDVLSVISTGngGTIELL 259
                     68999*****************************************************.8999999999************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++  +  p+    ss+vRae+lpSg+li+ +++g s +++v+hvdl+ ++++++lr+l+
  Cucsa.167110.4 260 YMQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTLSTGGPSgppPSSFVRAEMLPSGYLIRACEGG-SLIHIVDHVDLDVWSVPEVLRPLY 353
                     ***************************************99999888899*******************9.************************ PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+ + +++t+va+l++ ++
  Cucsa.167110.4 354 ESTKILAQRTTVAALRYVRQ 373
                     ***************99765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5971377IPR001356Homeobox domain
SMARTSM003897.1E-161581IPR001356Homeobox domain
PfamPF000465.8E-161876IPR001356Homeobox domain
SuperFamilySSF466891.8E-161880IPR009057Homeodomain-like
CDDcd000861.58E-161878No hitNo description
Gene3DG3DSA:1.10.10.601.3E-182076IPR009057Homeodomain-like
CDDcd146869.30E-670109No hitNo description
PROSITE profilePS5084825.045156383IPR002913START domain
CDDcd088755.61E-66160375No hitNo description
Gene3DG3DSA:3.30.530.202.5E-20164354IPR023393START-like domain
SMARTSM002344.8E-50165374IPR002913START domain
SuperFamilySSF559613.57E-35166376No hitNo description
PfamPF018525.6E-51166373IPR002913START domain
SuperFamilySSF559617.55E-5413496No hitNo description
SuperFamilySSF559617.55E-5524598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MALVMHRDSL NKQMDTSKYV RYTPEQVDAL ERVYAECPKP SSLRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQTVNRKL TAMNKLLMEE NDRLQTQVSR LVYENGYMRQ  120
QLHTASGTTT DNSCESVVMS GQQHQQQNPT KHTQKDANNP AGLLAIAEET LAEFLSKATG  180
TAVDWVQMIG MKPGPDSIGI VAVSRNCNGV AARACGLVSL EPMKVAEILK DRLSWFRDCR  240
CVDVLSVIST GNGGTIELLY MQTYAPTTLA AARDFWTLRY TTSLEDGSLV ICERSLTLST  300
GGPSGPPPSS FVRAEMLPSG YLIRACEGGS LIHIVDHVDL DVWSVPEVLR PLYESTKILA  360
QRTTVAALRY VRQIAQEASG EVQLGGGRQP AVLRTFSQRL CRGFNDAVNG FVDDGWSLMD  420
SDGVEDVTVV INSSPNKFLG SQYNTSLYPT FGGVLCAKAS MLLQNVPPAL LVRFLREHRS  480
EWADYGVDAY SAACLKASAY AVPCARPGGF PGGQVILPLA HTVENEEFLE VVRLEGHAMF  540
PEEAALGGRD MYLLQLCSGV DENTVGACAQ LVFAPIDESF ADDAPLLPSG FRVIPLESKA  600
EMPGATRTLD LASTLEVRPG TNRPGCETDV TNYNLRSVLT IAFQFTFENH MRDSVAAMAR  660
QYVRTVVGSV QRVAMAIAPS QLGSQIGPKS LPASPEALTL AQWITRSYRY DFYLYHVHSE  720
*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135550.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like
SwissprotA2XK300.0HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A0A0LVI50.0A0A0A0LVI5_CUCSA; Uncharacterized protein
STRINGXP_004158070.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  4. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  5. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  6. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]