PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.166230.1
Common NameCsa_5G175170, LOC101206050
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 257aa    MW: 26540.6 Da    PI: 10.5046
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.166230.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.93.5e-3831121389
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.......k 89 
                     +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a++++    s s+  ++ g       +
  Cucsa.166230.1  31 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSS---VSLSVRGNGGGsaslsspS 121
                     79******************************************************************8882...2222222222222333222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-3336116IPR005333Transcription factor, TCP
PROSITE profilePS5136928.2093690IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSNSDHTNGV SNGATIDTHK NHSSSNGALV VKKPPSKDRH SKVDGRGRRI RMPIICAARV  60
FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGTGTTPANF SSVSLSVRGN GGGSASLSSP  120
SSTTSTLSLS RPQPLSGPTP FILGKRVRSD DDAKDDALGV GQAVGSIVGP TGPGGYWAIP  180
ARPDYGQVWS FAAAAPSEMV VQPGGIAQQA SLFAQQQQPI REASAARVGN YLPGHLNLLA  240
SLSGGGGSGR REDDPR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143620.10.0PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX26e-89TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0A0KPX70.0A0A0A0KPX7_CUCSA; Uncharacterized protein
STRINGXP_004171408.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.19e-66TCP family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]