PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.166230.1 | ||||||||
Common Name | Csa_5G175170, LOC101206050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TCP | ||||||||
Protein Properties | Length: 257aa MW: 26540.6 Da PI: 10.5046 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.9 | 3.5e-38 | 31 | 121 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.......k 89 +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a++++ s s+ ++ g + Cucsa.166230.1 31 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSS---VSLSVRGNGGGsaslsspS 121 79******************************************************************8882...2222222222222333222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.8E-33 | 36 | 116 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.209 | 36 | 90 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MSNSDHTNGV SNGATIDTHK NHSSSNGALV VKKPPSKDRH SKVDGRGRRI RMPIICAARV 60 FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGTGTTPANF SSVSLSVRGN GGGSASLSSP 120 SSTTSTLSLS RPQPLSGPTP FILGKRVRSD DDAKDDALGV GQAVGSIVGP TGPGGYWAIP 180 ARPDYGQVWS FAAAAPSEMV VQPGGIAQQA SLFAQQQQPI REASAARVGN YLPGHLNLLA 240 SLSGGGGSGR REDDPR* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 0.0 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143620.1 | 0.0 | PREDICTED: transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 6e-89 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A0A0KPX7 | 0.0 | A0A0A0KPX7_CUCSA; Uncharacterized protein | ||||
STRING | XP_004171408.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5469 | 31 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 9e-66 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.166230.1 |
Entrez Gene | 101206050 |
Publications ? help Back to Top | |||
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