PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.166030.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

LBD

Protein Properties

Length: 204aa MW: 22271.7 Da PI: 7.5848

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.166030.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132	2.5e-41	52	151	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe +r+da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la Cucsa.166030.1 52 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLA 146 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e Cucsa.166030.1 147 KARAE 151 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.539	51	152	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-41	52	149	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MAYVAKCTNN SPPTPISVNN NPNNPLSFSP MSSSPPTSQP SSPPPPAVVL SPCAACKILR 60 RRCVEKCVLA PYFPPTDPLK FTIAHRVFGA SNIIKFLQEL PECQRTDAVS SMVYEANARL 120 RDPVYGSAGA ICQLQKQVSE LQAQLAKARA EVANMQQQQA NLLALICMEM RQSPEPVWQP 180 QLVDTTCFLD DATLSSPWEP LWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-39	51	152	10	111	LOB family transfactor Ramosa2.1
5ly0_B	4e-39	51	152	10	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	1e-161	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	1e-161	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143693.1	1e-147	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	1e-71	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1S3BDP1	1e-143	A0A1S3BDP1_CUCME; LOB domain-containing protein 1-like
STRING	XP_004143693.1	1e-146	(Cucumis sativus)
STRING	XP_004172387.1	1e-146	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	4e-66	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Cucsa.166030.1