PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.165940.1
Common NameCsa_5G175970
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family AP2
Protein Properties Length: 392aa    MW: 42966.5 Da    PI: 9.635
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.165940.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.5e-17124173155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Cucsa.165940.1 124 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 173
                     78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-9124173IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-16124182IPR016177DNA-binding domain
CDDcd000181.77E-11125183No hitNo description
PROSITE profilePS5103217.794125181IPR001471AP2/ERF domain
SMARTSM003801.9E-32125187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-17125181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MMLDLNDSIT NRDETPTSRI VMEDSETSNS SVVNATDEVS NSRDEDSSVL IFDILKRESS  60
GGGSGGGASS ELVTQTLFPV VGGWGGFWVV SNSGGGGGPP ELRIVQQKQQ QVRKSRRGPR  120
SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVDADINF  180
NINDYDEDMK QMKNLSKEEF VHVLRRQSTG FSRGGSKLRG LSLQKYGRWE NQMSQIIGKN  240
GIEQRSCKGD AMVDSNNGAN GHNLDLSIGG IFNYHLTNSP QKLNIERPKE KGREKRNNDS  300
TTKMSTSWGW QMPTSTTMSM SMSMPTTIQG NISGKNNNSM SSNNGIIARD QEAHISKIVA  360
ASSGFSSSSN FGSLYAQNNN ALHSTHCPNI S*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818961e-113LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132641e-113LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011654918.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7
SwissprotQ9SK034e-66RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A0A0KLE40.0A0A0A0KLE4_CUCSA; Uncharacterized protein
STRINGXP_004143690.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2481833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.23e-55related to AP2.7
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]