PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.165150.1 | ||||||||
Common Name | Csa_5G182740, LOC101204875 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | LBD | ||||||||
Protein Properties | Length: 221aa MW: 24154.9 Da PI: 4.2106 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116 | 2.3e-36 | 12 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++Cv+ap f ++ +++fa+vhk+FGasnv+kll +lp++ r++a+ +++yeA r+rdP yG+v++i++lqq++++l++e+ Cucsa.165150.1 12 SCGACKFLRRKCSDQCVFAPFFSYDEaTSHFAAVHKVFGASNVSKLLLHLPTHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVASLQEEI 106 6**********************98868******************************************************************* PP DUF260 95 allkee 100 + l+++ Cucsa.165150.1 107 EILGSQ 112 999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.724 | 11 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.4E-34 | 12 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MTGLNSSNSS TSCGACKFLR RKCSDQCVFA PFFSYDEATS HFAAVHKVFG ASNVSKLLLH 60 LPTHIRSHAA ITVAYEALER MRDPTYGCVA HIFALQQEVA SLQEEIEILG SQIANFATTG 120 GSIAAVDNPF IDQVQVPQQM DGFGMMNTNY YQNELVSELP YQSFDNVQND NTTAQMISPL 180 FCLGEEDGVF EFSNSNNVVE SSAFDVSVEE NCIGYPWIVG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-32 | 5 | 117 | 4 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-32 | 5 | 117 | 4 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681897 | 1e-145 | LN681897.1 Cucumis melo genomic scaffold, anchoredscaffold00063. | |||
GenBank | LN713264 | 1e-145 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004147712.1 | 1e-165 | PREDICTED: LOB domain-containing protein 33 | ||||
Swissprot | Q9LHS8 | 4e-58 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | A0A0A0KNX8 | 1e-163 | A0A0A0KNX8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004161921.1 | 1e-163 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9196 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 2e-60 | LOB domain-containing protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.165150.1 |
Entrez Gene | 101204875 |
Publications ? help Back to Top | |||
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