PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.165150.1
Common NameCsa_5G182740, LOC101204875
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 221aa    MW: 24154.9 Da    PI: 4.2106
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.165150.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601162.3e-36121121100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++Cv+ap f  ++ +++fa+vhk+FGasnv+kll +lp++ r++a+ +++yeA  r+rdP yG+v++i++lqq++++l++e+
  Cucsa.165150.1  12 SCGACKFLRRKCSDQCVFAPFFSYDEaTSHFAAVHKVFGASNVSKLLLHLPTHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVASLQEEI 106
                     6**********************98868******************************************************************* PP

          DUF260  95 allkee 100
                     + l+++
  Cucsa.165150.1 107 EILGSQ 112
                     999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.72411113IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-3412109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MTGLNSSNSS TSCGACKFLR RKCSDQCVFA PFFSYDEATS HFAAVHKVFG ASNVSKLLLH  60
LPTHIRSHAA ITVAYEALER MRDPTYGCVA HIFALQQEVA SLQEEIEILG SQIANFATTG  120
GSIAAVDNPF IDQVQVPQQM DGFGMMNTNY YQNELVSELP YQSFDNVQND NTTAQMISPL  180
FCLGEEDGVF EFSNSNNVVE SSAFDVSVEE NCIGYPWIVG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3251174115LOB family transfactor Ramosa2.1
5ly0_B2e-3251174115LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818971e-145LN681897.1 Cucumis melo genomic scaffold, anchoredscaffold00063.
GenBankLN7132641e-145LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147712.11e-165PREDICTED: LOB domain-containing protein 33
SwissprotQ9LHS84e-58LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A0A0KNX81e-163A0A0A0KNX8_CUCSA; Uncharacterized protein
STRINGXP_004161921.11e-163(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-60LOB domain-containing protein 33
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]