PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.163000.1
Common NameCsa_2G383330, LOC101208063
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CO-like
Protein Properties Length: 338aa    MW: 36956.2 Da    PI: 6.7233
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.163000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.91.8e-07436436
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                    + C+ +++  ++lfC+ ++ +lC  C ++ H  
  Cucsa.163000.1  4 KLCDSCKSATATLFCRADSAFLCLGCDSKVHAA 36
                    68**************************99954 PP
2zf-B_box24.94.3e-084691342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  Cucsa.163000.1 46 VWVCEVCEQAPAHVTCKADAAALCLTCDHDIHSAnplarrHERVPV 91
                    689*****************************66899999*99986 PP
3CCT70.44.4e-24276319144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Cucsa.163000.1 276 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 319
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.0E-13148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.523148IPR000315B-box-type zinc finger
PfamPF006431.5E-5443IPR000315B-box-type zinc finger
CDDcd000211.56E-8548No hitNo description
PROSITE profilePS5011910.684491IPR000315B-box-type zinc finger
PfamPF006432.2E-64691IPR000315B-box-type zinc finger
CDDcd000216.55E-84791No hitNo description
SMARTSM003365.9E-94991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787276318IPR010402CCT domain
PfamPF062035.0E-18276318IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRA DSAFLCLGCD SKVHAANKLA SRHARVWVCE VCEQAPAHVT  60
CKADAAALCL TCDHDIHSAN PLARRHERVP VTPFYDTSNS DNSLPVKPSA AINFLDDRYF  120
SDVDADAADV SREEAEAASW LLPNPNPKAI ESSDLNSGKF EFPEMDPYLD LDYSHVDPKL  180
EAQEQNSSGA DGVVPVQSKG VHLSSANDRC LGIDFTGTKS FPYGHNPQSI SHSVSSSSIE  240
VGVVPDGNAM THVSNPYTKP STESSVQPLQ ISPADREARV LRYREKRKNR KFEKTIRYAS  300
RKAYAETRPR IKGRFAKRTD IELDVDRVSG YGVVPSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138691.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T91e-141COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A0A0LSP80.0A0A0A0LSP8_CUCSA; Uncharacterized protein
STRINGXP_004167826.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-135CONSTANS-like 4
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]