PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.162820.1 | ||||||||
Common Name | Csa_2G382660, LOC101204768 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 172aa MW: 19312.8 Da PI: 9.9469 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.5 | 7.7e-30 | 89 | 147 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK k+++ pr+Y++C+s+gCpvkkkv+rs e++++v++tY g+Hnh+ Cucsa.162820.1 89 VKDGYKWRKYGQKITKDNQSPRAYFKCSSPGCPVKKKVQRSLENKSMVIVTYDGHHNHN 147 58********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.5E-29 | 81 | 148 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.212 | 84 | 149 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.36E-26 | 85 | 148 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-31 | 89 | 148 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.9E-24 | 90 | 146 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
VECLQTELEK LRKENEALKL MLKVVSIKNL VSQVDVCSRD HRHDQNDEGS RSERANLKVS 60 PPALALALET SSTTQAYART TFKDQALMVK DGYKWRKYGQ KITKDNQSPR AYFKCSSPGC 120 PVKKKVQRSL ENKSMVIVTY DGHHNHNHNH ENASPPPLSS SQRGSSSSPP LP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-21 | 78 | 147 | 1 | 72 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 8e-67 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 8e-67 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004138843.1 | 1e-126 | PREDICTED: probable WRKY transcription factor 60 | ||||
TrEMBL | A0A0A0LMJ1 | 1e-125 | A0A0A0LMJ1_CUCSA; Uncharacterized protein | ||||
STRING | XP_004138843.1 | 1e-126 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7398 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25000.1 | 2e-28 | WRKY DNA-binding protein 60 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.162820.1 |
Entrez Gene | 101204768 |
Publications ? help Back to Top | |||
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