PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.161430.1

Common Name

Csa_2G375240, LOC101206476

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB

Protein Properties

Length: 996aa MW: 111088 Da PI: 5.5976

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.161430.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.1	2e-18	38	84	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l Cucsa.161430.1 38 KGQWTAEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 84 799**************************9.**********986 PP
2	Myb_DNA-binding	66.6	4.4e-21	90	136	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++v++v+++G++ W+tIa++++ gR +kqc++rw+++l Cucsa.161430.1 90 KGPWSKEEDEIIVELVEKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 136 79****************************.***********97 PP
3	Myb_DNA-binding	48.7	1.8e-15	142	184	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ Cucsa.161430.1 142 KEAWTQEEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 184 579*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.015	33	84	IPR017930	Myb domain
SuperFamily	SSF46689	2.08E-18	36	98	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-15	37	86	IPR001005	SANT/Myb domain
Pfam	PF00249	8.4E-16	38	84	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-22	39	92	IPR009057	Homeodomain-like
CDD	cd00167	3.41E-14	41	84	No hit	No description
PROSITE profile	PS51294	33.856	85	140	IPR017930	Myb domain
SuperFamily	SSF46689	4.87E-32	87	183	IPR009057	Homeodomain-like
SMART	SM00717	8.5E-20	89	138	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-19	90	136	IPR001005	SANT/Myb domain
CDD	cd00167	1.98E-17	92	136	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.5E-29	93	140	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.2E-21	141	191	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.563	141	191	IPR017930	Myb domain
SMART	SM00717	2.2E-15	141	189	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-13	142	185	IPR001005	SANT/Myb domain
CDD	cd00167	4.50E-12	144	184	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003713	Molecular Function	transcription coactivator activity

Sequence ? help Back to Top
Protein Sequence Length: 996 aa Download sequence Send to blast
MESDPPLCTS LDVSGDSGQN IRALHSRRTT GPTRRSTKGQ WTAEEDEILR KAVQRFKGKN 60 WKKIAECFKD RTDVQCLHRW QKVLNPELVK GPWSKEEDEI IVELVEKYGP KKWSTIAQHL 120 PGRIGKQCRE RWHNHLNPAI NKEAWTQEEE LALIRAHQIY GNRWAELTKF LPGRTDNAIK 180 NHWNSSVKKK LESYLASGLL EQYQPLHHAS QSSLPMLSSS RVQSSMDDSS LRGAETEDIS 240 EVSQTSAIGA CSNTIPRTKE ECQLAEDAFL KDEPCSPPHC PGQYHASLDN ITFSIPEMLS 300 ELGCYVKTPN HNFSQDCRTS STEDNRYNLY ELPNISSLEL GHELPHFQAN GSQEVETAPH 360 QTSAGFSAST ADNMATASVK PEHMLISDYE CCTVLFSDAV VNESFPSENT INTSDMVELS 420 GYAHPLHRQS TSIELPESNR NIPLQSYHHA RSDVLDNSCS QRFLAPLLVS ANDDTYVYTS 480 DTSHLFETLE QELVANGHDG FIYTNESTDS PSKNGFMNAE LQKQQGSKDP SKLVPVNTFS 540 SEPKTAENLP SFSGREKTHP DQPDLIGALC YEPPRFPSLD VPFLSCDLAP AASDMQQEYS 600 PLGIRQLMMS SINCLTPFRL WNSPTRDESP DALLKSAAKT FTNTPSILKK RHREFLSPLS 660 DKRCDKKQEI DVGISRTPSH TNPSHQTVNS RSSEDKENIC PAEEVRQEKH SDLYNISHCK 720 RPERTSDSFS FQEKKMQELD NPAANERIDS IGQIEVQQRS RILLECDTNE SLSYSTNRDG 780 VAEMQCSRTS TSLQDQDFPS NLSDDHCALA NCSIASGTCH GRTLEVAGDN ASKESSLETI 840 TIFGGTPFKR SIESPSAWKS PWFINSFLFG SRMDTDEVGL FMSPGDRSYD AIGLMKEVSE 900 QTAAACANAQ EVLGNETPQS LLKGRRGKYE NHNNDKNNHF TNSRSTLAPD ILTERRTLDF 960 SECGTPGKGT ENGKSSTATT RSFSSPSSYL LKGCR*

Sequence ? help Back to Top

Protein Sequence Length: 996 aa Download sequence Send to blast

MESDPPLCTS LDVSGDSGQN IRALHSRRTT GPTRRSTKGQ WTAEEDEILR KAVQRFKGKN  60
WKKIAECFKD RTDVQCLHRW QKVLNPELVK GPWSKEEDEI IVELVEKYGP KKWSTIAQHL  120
PGRIGKQCRE RWHNHLNPAI NKEAWTQEEE LALIRAHQIY GNRWAELTKF LPGRTDNAIK  180
NHWNSSVKKK LESYLASGLL EQYQPLHHAS QSSLPMLSSS RVQSSMDDSS LRGAETEDIS  240
EVSQTSAIGA CSNTIPRTKE ECQLAEDAFL KDEPCSPPHC PGQYHASLDN ITFSIPEMLS  300
ELGCYVKTPN HNFSQDCRTS STEDNRYNLY ELPNISSLEL GHELPHFQAN GSQEVETAPH  360
QTSAGFSAST ADNMATASVK PEHMLISDYE CCTVLFSDAV VNESFPSENT INTSDMVELS  420
GYAHPLHRQS TSIELPESNR NIPLQSYHHA RSDVLDNSCS QRFLAPLLVS ANDDTYVYTS  480
DTSHLFETLE QELVANGHDG FIYTNESTDS PSKNGFMNAE LQKQQGSKDP SKLVPVNTFS  540
SEPKTAENLP SFSGREKTHP DQPDLIGALC YEPPRFPSLD VPFLSCDLAP AASDMQQEYS  600
PLGIRQLMMS SINCLTPFRL WNSPTRDESP DALLKSAAKT FTNTPSILKK RHREFLSPLS  660
DKRCDKKQEI DVGISRTPSH TNPSHQTVNS RSSEDKENIC PAEEVRQEKH SDLYNISHCK  720
RPERTSDSFS FQEKKMQELD NPAANERIDS IGQIEVQQRS RILLECDTNE SLSYSTNRDG  780
VAEMQCSRTS TSLQDQDFPS NLSDDHCALA NCSIASGTCH GRTLEVAGDN ASKESSLETI  840
TIFGGTPFKR SIESPSAWKS PWFINSFLFG SRMDTDEVGL FMSPGDRSYD AIGLMKEVSE  900
QTAAACANAQ EVLGNETPQS LLKGRRGKYE NHNNDKNNHF TNSRSTLAPD ILTERRTLDF  960
SECGTPGKGT ENGKSSTATT RSFSSPSSYL LKGCR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	2e-69	38	191	6	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	2e-69	38	191	6	159	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00466	DAP	Transfer from AT4G32730	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	0.0	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004150290.1	0.0	PREDICTED: myb-related protein 3R-1
TrEMBL	A0A0A0LLZ9	0.0	A0A0A0LLZ9_CUCSA; Uncharacterized protein
STRING	XP_004150290.1	0.0	(Cucumis sativus)
STRING	XP_004164042.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3727	33	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	0.0	Homeodomain-like protein

Link Out ? help Back to Top
Phytozome	Cucsa.161430.1
Entrez Gene	101206476

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]