PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.160520.1 | ||||||||
Common Name | Csa_2G370420, LOC101214596 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | GATA | ||||||||
Protein Properties | Length: 353aa MW: 38582.8 Da PI: 4.6064 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.7 | 4.9e-16 | 204 | 240 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ Cucsa.160520.1 204 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 240 *******99*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 13.016 | 65 | 100 | IPR010399 | Tify domain |
SMART | SM00979 | 4.5E-7 | 65 | 100 | IPR010399 | Tify domain |
Pfam | PF06200 | 4.1E-10 | 68 | 99 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.65 | 133 | 175 | IPR010402 | CCT domain |
Pfam | PF06203 | 9.8E-15 | 133 | 174 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 8.524 | 198 | 246 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.9E-8 | 198 | 251 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.37E-11 | 199 | 248 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.3E-14 | 202 | 245 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.72E-16 | 203 | 247 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 204 | 231 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.8E-14 | 204 | 240 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MAAANPQPLQ ARPFQEHVQV PSMMADDDGE YEDGGGGGGG GDVMDDVEEA HMTSVSVANH 60 GGLVMASRAS ELTLSFEGEV YVFPEVTPEK VQAVLLLLGG RDVPADVPTM EVPYDHNNRG 120 MVDTPKRSNL SRRIASLVRF REKRKERCFD KKIRYTVRKE VAQRMHRKNG QFASLKESSG 180 ASSWESAHSC LQDGTRSETV LRKCQHCGVS ENNTPAMRRG PAGPRTLCNA CGLMWANKGT 240 LRDLSKGGRN VSLDHMEPET PMDVKPVIME GEFSGIQDEH GTPEDPSKTM TEGSSNPSID 300 LDEEDINETT GELTNSLPMR IVNHSSNDDE QEPLVELANP SDTDIDIPTN FD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 127 | DTPKRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 1e-137 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 1e-137 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011649686.1 | 0.0 | PREDICTED: GATA transcription factor 24-like isoform X1 | ||||
Refseq | XP_011649687.1 | 0.0 | PREDICTED: GATA transcription factor 24-like isoform X1 | ||||
Swissprot | Q8GXL7 | 2e-70 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A0A0LLS6 | 0.0 | A0A0A0LLS6_CUCSA; Uncharacterized protein | ||||
STRING | XP_008444908.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3319 | 33 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 3e-68 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.160520.1 |
Entrez Gene | 101214596 |
Publications ? help Back to Top | |||
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