PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.160390.1 | ||||||||
Common Name | Csa_2G369820, LOC101216697 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 239aa MW: 26434.4 Da PI: 7.0849 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105.6 | 2.9e-33 | 47 | 102 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY+eClkNhA+ +GghavDGCgEfmp+ geeg+++alkCaAC+CHRnFHR+e+++ Cucsa.160390.1 47 SIRYRECLKNHAIGIGGHAVDGCGEFMPA-GEEGSIDALKCAACNCHRNFHRKETDS 102 689*************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 9.0E-24 | 35 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.5E-30 | 48 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.1E-30 | 49 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.735 | 50 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 7.53E-20 | 161 | 236 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-31 | 163 | 237 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 9.3E-27 | 175 | 231 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MEFDEENDEE IMDEMPIATH HYDSLTNSAS TRPKPGEGAS TARKASSIRY RECLKNHAIG 60 IGGHAVDGCG EFMPAGEEGS IDALKCAACN CHRNFHRKET DSDQGHYYYQ QQQQQICPYR 120 GPTPHPSAYV YMRGAPVQQR ALALPAAAGG REEDDTSNPS SSGGGGGSGS GLLLKKRFRT 180 KFSSEQKEKM LEFAEKVGWT IQKHDEADVE RFCMETGVRR QVLKVWMHNN KHTLGKKP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-27 | 176 | 233 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 0.0 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004152612.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 2 | ||||
Swissprot | Q9SB61 | 5e-74 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A0A0LRT7 | 1e-180 | A0A0A0LRT7_CUCSA; Uncharacterized protein | ||||
STRING | XP_004152612.1 | 0.0 | (Cucumis sativus) | ||||
STRING | XP_004170820.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-69 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.160390.1 |
Entrez Gene | 101216697 |
Publications ? help Back to Top | |||
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