PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.160250.1
Common NameCsa_2G369200, LOC101218813
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 308aa    MW: 34840.3 Da    PI: 6.4065
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.160250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.3e-13114165155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Cucsa.160250.1 114 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YVQRGDQASIIGGAINFVKELE 165
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.60E-14112169No hitNo description
SuperFamilySSF474599.95E-17113179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.288113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-14113169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-10119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MMALETVVYP QDTFSYVCRD FSSYAGGPPW GTYDYAFQFE EQKAFLGLIE NQTQDQKWEP  60
SPDESSINHP LPGGGSLYPP LELEPTPPPP PPTTGRRKRR RTRSTKNKEE IENQRMTHIA  120
VERNRRKQMN EYLAVLRSLM PSSYVQRGDQ ASIIGGAINF VKELEQQLQF IKVHKEQTDT  180
SPFADFFSFP QYSTRATTQS KNNNSPHDSS IAHTQWPAGD IEVTMVDTHA NLKILSQKRP  240
RQLLKMVAGF QSLRLTILHL NVTTSDQMVL YSLSIKVEEG CQLNTVDEIA AAVNQILLSI  300
QEEAVYS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196100RKRRR
296101RKRRRT
3114125RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152621.10.0PREDICTED: transcription factor bHLH96
SwissprotQ9C7T43e-93BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0A0LLQ60.0A0A0A0LLQ6_CUCSA; Uncharacterized protein
STRINGXP_004164228.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.18e-92bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  3. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]