PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.159020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 279aa MW: 32046.3 Da PI: 4.4062 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.4 | 6.5e-20 | 65 | 118 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le Fe+++++ e+++eLAkklgL+ rqV vWFqNrRa++k Cucsa.159020.1 65 KKRRLTQEQVHLLEISFESENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWK 118 5678*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.6 | 2.6e-41 | 64 | 156 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl++eqv+lLE sFe+e+kLeperK+ela++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+ +++ + + ke+e+L++e+++ Cucsa.159020.1 64 EKKRRLTQEQVHLLEISFESENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFRSSYDFIAKENERLKAEVAS 156 69***********************************************************************************99999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.7E-20 | 48 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.799 | 60 | 120 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-19 | 63 | 124 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.87E-18 | 65 | 121 | No hit | No description |
Pfam | PF00046 | 4.2E-17 | 65 | 118 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-21 | 66 | 127 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.4E-6 | 91 | 100 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.4E-6 | 100 | 116 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.0E-16 | 120 | 162 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001558 | Biological Process | regulation of cell growth | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MMSDALIFNR SPGHANMLFF GSSDSIPRGP SFMMGMEETS KRRSFFSSPD DLFDDDYYDD 60 QPPEKKRRLT QEQVHLLEIS FESENKLEPE RKTELAKKLG LQPRQVAVWF QNRRARWKTK 120 QLERDYDLLK SSYDSFRSSY DFIAKENERL KAEVASLTEK LQAKEVVESS FHAKNPDPFL 180 EDQLLVPVVQ QSIKIEDHHS CRSNGSAVLD EDGPHLLDSG DSYILSNDYD GCVLPTFGVN 240 SEEEDVSDDG QGYFSDVYTT VDQQTHEGEP LTWWDWTS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 120 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00323 | DAP | Transfer from AT3G01470 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681890 | 1e-176 | LN681890.1 Cucumis melo genomic scaffold, anchoredscaffold00048. | |||
GenBank | LN713263 | 1e-176 | LN713263.1 Cucumis melo genomic chromosome, chr_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004142356.2 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT5-like | ||||
Swissprot | Q02283 | 2e-84 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A1S3C9T9 | 0.0 | A0A1S3C9T9_CUCME; homeobox-leucine zipper protein HAT5-like | ||||
STRING | XP_004159074.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11283 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 4e-74 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.159020.1 |
Publications ? help Back to Top | |||
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