PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.158320.1

Common Name

Csa_5G636510

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ZF-HD

Protein Properties

Length: 308aa MW: 33292 Da PI: 8.4213

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.158320.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	106.9	1.2e-33	56	112	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 v YkeClkNhAa+lG+ha+DGCgEfmps++++ +++++l+CaACgCHRnFHRr++e Cucsa.158320.1 56 VVSYKECLKNHAATLGAHALDGCGEFMPSPSATpSDPTSLRCAACGCHRNFHRRDPE 112 589***************************99******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	9.2E-28	57	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	8.0E-17	57	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.2E-30	59	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.434	59	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.46E-18	186	260	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-29	187	261	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.9E-27	199	256	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MDLAPAPITT SSNNTKSPDP DSDTPTKIPP SFTNGVLKRH HHNHHHHHRP PSSTVVVSYK 60 ECLKNHAATL GAHALDGCGE FMPSPSATPS DPTSLRCAAC GCHRNFHRRD PEDPISTLAI 120 NTAPTHVIEY QPHHRHHPPP PPLAGNRSPN SASPPPISSS YYPSAPHMLL ALSAGLSGRP 180 PENHTQGNNS VPTVSPNTRK RFRTKFSNEQ KEKMLDFAER VGWKMQKRDE DLVRDFCNQV 240 GVERGVLKVW MHNNKNTMGK KPDSNGDATA TAIATVAAAI ATVNNHEDEP DGGLHMHIGS 300 NGSSSSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-23	198	257	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU200164	0.0	EU200164.1 Cucumis sativus zinc finger-homeodomain protein 1 (ZHD1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011655994.1	0.0	PREDICTED: zinc-finger homeodomain protein 10-like
Swissprot	Q9LXG0	1e-72	ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBL	A0A0A0KSA4	0.0	A0A0A0KSA4_CUCSA; Uncharacterized protein
STRING	XP_004168480.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1979	31	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28920.1	2e-67	homeobox protein 34

Link Out ? help Back to Top
Phytozome	Cucsa.158320.1
Entrez Gene	101213548

Publications ? help Back to Top
Hu W,dePamphilis CW,Ma H Phylogenetic analysis of the plant-specific zinc finger-homeobox and mini zinc finger gene families. J Integr Plant Biol, 2008. 50(8): p. 1031-45 [PMID:18713354] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]