PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.157230.1
Common NameCsa_1G001450, LOC101222787
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family SBP
Protein Properties Length: 380aa    MW: 42116.8 Da    PI: 7.0343
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.157230.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.21.8e-4191167278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v+gC +dls+ ++yhrrhkvCe hsk+p+v++ gl+qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  Cucsa.157230.1  91 CLVDGCVSDLSNYRDYHRRHKVCELHSKTPQVTIGGLKQRFCQQCSRFHSLDEFDEGKRSCRKRLDGHNRRRRKPQS 167
                     **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.1E-3483152IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.68488165IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.03E-3989170IPR004333Transcription factor, SBP-box
PfamPF031103.1E-3191164IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDWNLKTPSW DFTQLEQDAL KNINSIGASS NFVEHIATSG DFTVDLKLGQ VSNLGTKYVV  60
NEPGVFKMAP SPSEPSKRAR GSGNGAQPLS CLVDGCVSDL SNYRDYHRRH KVCELHSKTP  120
QVTIGGLKQR FCQQCSRFHS LDEFDEGKRS CRKRLDGHNR RRRKPQSDSL SRSILSHYQG  180
SQLLPFSSSH VYPSTLVMNH SWRDLANNTE IDARLHVQQE PTHFPDKHNI YLGSSSNDSV  240
HKIGKQVTFM QSDNPESSVG QPLVKTIDFS ENEIGRSKML YDGFKTPGHE SDCALSLLSS  300
LQTQASGIGF SEAEQDRHLI SFLQPLDVSL GHHNSLEPIN SVLNGSVSNA DINCSGMFHI  360
ASNDGCNEAP PPSLPFHWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-29911641184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147164KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818140.0LN681814.1 Cucumis melo genomic scaffold, anchoredscaffold00089.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138255.10.0PREDICTED: squamosa promoter-binding-like protein 13A
TrEMBLA0A0A0LNV80.0A0A0A0LNV8_CUCSA; Uncharacterized protein
STRINGXP_004167278.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-61SBP family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]