PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.155260.1
Common NameCsa_1G588540
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 608aa    MW: 67391.1 Da    PI: 6.9568
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.155260.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06318336826
                     GGGGTS--TTTTT-SS-SS CS
         zf-CCCH   8 ffartGtCkyGdrCkFaHg 26 
                      f  +G C++G++C+F+H+
  Cucsa.155260.1 318 KFTSSGSCPRGEKCNFHHD 336
                     56668*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073801.64E-3520233No hitNo description
PROSITE profilePS5010313.939310338IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-4312337IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-5313339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-6314338IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4315336IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.779342370IPR000571Zinc finger, CCCH-type
SMARTSM003560.019344369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001347369IPR000571Zinc finger, CCCH-type
PfamPF046771.8E-38387500IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541971.53E-9388468IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.101.5E-6392470IPR011146HIT-like domain
PfamPF046761.8E-15525604IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
SVFSATVPVP VFIMSPPRIL LCGDVFGRLN QLYKRVVSVN KSAGPFDVLL CVGQFFPDST  60
DQLDEFMDYV EGRSVIPLST YFIGDYGVGA AKVLLASSKD SANQGFKMDG LKICANLHWL  120
KGSGKFTLHG LSVAYLSGRC SSDGLPFGTY TQDDVDALRA IAEEPGVVDL VPTSDIPPGV  180
SDLSGSDATI SELVVEIKPR YHIAGTKGVF FAREPYSNVD AVHVTRFLGL ASVGNKEKQK  240
FIHAISPIPS STMSAVEISM KPPNTTLSPY TLTERKSEAS DSAKRSSNSV SESQYWRYEV  300
SQKRQKYGTS DTNKLCFKFT SSGSCPRGEK CNFHHDMDAR EQSQRGVCFD FLNKGKCERG  360
PDCNFKHSFQ NEFDSHSGKR RSGNAGTNRS KECWFCLSSP NIESHLIVSV GESFYCALAK  420
GPLVPDHILV IPVEHFPNTL SLGPDYETEI NRLQNCLRKY FKSQGKEVVF FEWVSKRSTH  480
ANLQAVPIPS SRAHVVQNIF DMAAEKLGFK FVISKSADAP SEGRKSLRTQ FDSDHSFFYA  540
ELPECVTLSH VIEENEIFPA QFGREVLAGL LNMADKADWR NCAHSKEEET KMAEDFKIRF  600
ENFDPNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U9e-13391604673887CWF19-like protein 2
6id1_U9e-13391604673887CWF19-like protein 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659983.10.0PREDICTED: zinc finger CCCH domain-containing protein 64 isoform X1
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLA0A0A0M1Z00.0A0A0A0M1Z0_CUCSA; Uncharacterized protein
STRINGXP_004158448.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71321923
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]