PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.154520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 363aa MW: 39308.4 Da PI: 5.3857 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65 | 1.6e-20 | 160 | 209 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g Cucsa.154520.1 160 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 209 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.72E-33 | 159 | 219 | No hit | No description |
SuperFamily | SSF54171 | 2.09E-23 | 160 | 218 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-32 | 160 | 218 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-37 | 160 | 223 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.169 | 160 | 217 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-14 | 161 | 209 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 161 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 183 | 199 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MAALMDLYGC REFQSDPFGG ELMEAIEPFM KVASPSYFPS SFPDFSFSSS SSSSSSSIPT 60 ESTSYPSDCS PPLTHLFSDG FSGQDFHGVE QSPSIGLNYL TPFQIQQIQS QFGLHTQIQP 120 VWGQINNQVV RNQSNTAGNL LGPRGIPMKH VGSPPKSTKL YRGVRQRHWG KWVAEIRLPR 180 NRTRLWLGTF DTAEEAALAY DKAAYKLRGD FARLNFPHLK HHGSSVGGDF GEYKPLHSAV 240 DAKLEAICQT LAESQTKGKS DRRKSKSSGS STIASGSQAP TVIDSDDDLK PADAGSSGSE 300 VCCKAENSSS PVSAESDESG GSSPLSDLTF QDSTDSAWEQ TTESCLLQKY PSEIDWASIF 360 TN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-21 | 159 | 217 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00026 | PBM | Transfer from AT1G78080 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 0.0 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004150659.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-4 | ||||
Swissprot | Q8H1E4 | 3e-84 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A1S3BC06 | 0.0 | A0A1S3BC06_CUCME; ethylene-responsive transcription factor RAP2-4-like | ||||
STRING | XP_004166434.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 7e-65 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.154520.1 |
Publications ? help Back to Top | |||
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