PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.152770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 177aa MW: 19741.7 Da PI: 10.8171 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.6 | 1.3e-17 | 49 | 97 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +g+WvAeI+d + r +lg+f t+eeAa+a+++a+ l+g Cucsa.152770.1 49 FVGVRQRP-SGKWVAEIKDaT-----HdIRMWLGTFNTPEEAARAYDEAACLLRG 97 78******.7*********44.....47**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 9.4E-28 | 48 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.467 | 48 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-35 | 48 | 111 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-12 | 49 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-19 | 49 | 105 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-7 | 49 | 60 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.21E-29 | 49 | 104 | No hit | No description |
PRINTS | PR00367 | 1.1E-7 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
FYIFFNQIEK GNSTCLIHPN SQHRAATSFL IFQGNKVVDH SKRSGKRSFV GVRQRPSGKW 60 VAEIKDATHD IRMWLGTFNT PEEAARAYDE AACLLRGSNA RTNFTLASNS SSALSFKIRN 120 LLIHKITLKR SSITETHAHS GAAAMEKLRW VFVTSPIHAA IFLLGSILIW MSLCLH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-15 | 49 | 114 | 15 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681842 | 1e-135 | LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022. | |||
GenBank | LN713259 | 1e-135 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004149659.1 | 4e-64 | PREDICTED: ethylene-responsive transcription factor ERF087 | ||||
Swissprot | A0A1X9PY88 | 2e-34 | ERN1_LOTJA; Ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | A0A0A0L1N6 | 8e-63 | A0A0A0L1N6_CUCSA; Uncharacterized protein | ||||
STRING | XP_004149659.1 | 1e-63 | (Cucumis sativus) | ||||
STRING | XP_004164936.1 | 1e-63 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8324 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 8e-37 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.152770.1 |
Publications ? help Back to Top | |||
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