PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.149510.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YA
Protein Properties Length: 117aa    MW: 13217 Da    PI: 9.2799
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.149510.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA41.73.9e-131650136
       CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36
                    +ep++ Na Qy++Il+RR +Rak+e+e+k   ksrk
  Cucsa.149510.1 16 EEPVFFNAEQYHGILRRRLSRAKAESENKA-LKSRK 50
                    69***************************9.78887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-111477IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115217.6721577IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.6E-81751IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MGIQQAGVPL LTDAVEEPVF FNAEQYHGIL RRRLSRAKAE SENKALKSRK FITSHCIYLL  60
VLIQWGARGC GGRFLKSNEN ENHQNEVASG FGSMLLREDP KCSRQKYASF NTIVNTE
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818755e-61LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132625e-61LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134622.19e-41PREDICTED: nuclear transcription factor Y subunit A-7
RefseqXP_011658320.19e-41PREDICTED: nuclear transcription factor Y subunit A-7
RefseqXP_011658321.19e-41PREDICTED: nuclear transcription factor Y subunit A-7
SwissprotQ84JP15e-27NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A0A0KIV02e-39A0A0A0KIV0_CUCSA; Uncharacterized protein
STRINGXP_004134622.13e-40(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53793355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.12e-29nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]