PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.149280.2
Common NameCsa_3G646560, LOC101207015
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 350aa    MW: 38690.5 Da    PI: 5.1879
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.149280.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.9e-2094143255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G+r+++ +g+W+AeIrdp++    +r++lg+f taeeAa+a++a +++++g
  Cucsa.149280.2  94 QYRGIRQRP-WGKWAAEIRDPRK---GARVWLGTFNTAEEAARAYDAEARRIRG 143
                     69*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-2294152IPR016177DNA-binding domain
SMARTSM003802.1E-3794157IPR001471AP2/ERF domain
CDDcd000183.96E-3394152No hitNo description
PROSITE profilePS5103224.02694151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3294152IPR001471AP2/ERF domain
PRINTSPR003677.7E-1295106IPR001471AP2/ERF domain
PfamPF008471.3E-1295143IPR001471AP2/ERF domain
PRINTSPR003677.7E-12117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MCGGAIISDF IPPSRSNRVT ADHLWPNLKK PKSGKHSSPR SLRSRIFDVD DFEADFRDFK  60
DESDVEDEDG SSATKSVEFN EQAEKSANTK RKNQYRGIRQ RPWGKWAAEI RDPRKGARVW  120
LGTFNTAEEA ARAYDAEARR IRGNKARVNF PDEPLPNTQK RKNSQKSKQH IKENVKANQH  180
PNQNYSGTTG FLEVKPPTDQ VGYMDSFPAS MDSSPSDDMV MYFNSDEGSN SISCSGFGLG  240
DHGVKTPEIS SVFSATDSEF TEDMHTRKKQ RCSSGDAITA EDVGASAKTL SEELSAFESQ  300
MKLFQMPYLE GNWDNSMDAF LGGGATQDGG NSLDLWSFDD LPAMGGGVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-2294151260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818290.0LN681829.1 Cucumis melo genomic scaffold, anchoredscaffold00054.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004144443.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12
RefseqXP_011651721.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12
TrEMBLA0A0A0LC050.0A0A0A0LC05_CUCSA; Uncharacterized protein
STRINGXP_004166643.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.31e-61related to AP2 12
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]