PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cucsa.149280.1 | ||||||||
Common Name | Csa_3G646560, LOC101207015 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 371aa MW: 40935 Da PI: 5.3397 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 9.7e-20 | 115 | 164 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ +r++lg+f taeeAa+a++a +++++g Cucsa.149280.1 115 QYRGIRQRP-WGKWAAEIRDPRK---GARVWLGTFNTAEEAARAYDAEARRIRG 164 69*******.**********954...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.09E-33 | 115 | 173 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-32 | 115 | 173 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.026 | 115 | 172 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-22 | 115 | 173 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.1E-37 | 115 | 178 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-12 | 116 | 127 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-12 | 116 | 164 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-12 | 138 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 371 aa Download sequence Send to blast |
MCGGAIISDF IPPSRSNRVT ADHLWPNLKK PKSGKHSSPR SLRSRIFDVD DFEADFRDFK 60 DESDVEDEDG FSDIKPFLFS TPNSACSSTR GSSATKSVEF NEQAEKSANT KRKNQYRGIR 120 QRPWGKWAAE IRDPRKGARV WLGTFNTAEE AARAYDAEAR RIRGNKARVN FPDEPLPNTQ 180 KRKNSQKSKQ HIKENVKANQ HPNQNYSGTT GFLEVKPPTD QVGYMDSFPA SMDSSPSDDM 240 VMYFNSDEGS NSISCSGFGL GDHGVKTPEI SSVFSATDSE FTEDMHTRKK QRCSSGDAIT 300 AEDVGASAKT LSEELSAFES QMKLFQMPYL EGNWDNSMDA FLGGGATQDG GNSLDLWSFD 360 DLPAMGGGVF * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-22 | 115 | 172 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681829 | 0.0 | LN681829.1 Cucumis melo genomic scaffold, anchoredscaffold00054. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004144443.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12 | ||||
Refseq | XP_011651721.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A0A0LC05 | 0.0 | A0A0A0LC05_CUCSA; Uncharacterized protein | ||||
STRING | XP_004166643.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4808 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G53910.3 | 4e-70 | related to AP2 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cucsa.149280.1 |
Entrez Gene | 101207015 |
Publications ? help Back to Top | |||
---|---|---|---|
|