PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.148430.1
Common NameCsa_7G044240, LOC101219415
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HD-ZIP
Protein Properties Length: 762aa    MW: 82861.5 Da    PI: 6.0989
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.148430.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-1985140156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++++e++F+++++p+ ++r+eL+++l+L+  qVk+WFqN+R+++k
  Cucsa.148430.1  85 KKRYHRHTQHQIQQMEAFFKECPHPDDKQRKELSRELNLEPLQVKFWFQNKRTQMK 140
                     688999***********************************************999 PP
2START223.28.1e-702784981206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++elv++a+ +ep+W++ +     ++n++e++++f+++ +     +s ea+ra++vv+m++  lve l+d++ qW++t++    +a+tl
  Cucsa.148430.1 278 ELAVAAMEELVRMAQMGEPLWMTGVdgstNELNEEEYVRSFPRGIGpkpsgFSCEASRATAVVIMNHISLVEMLMDVN-QWSTTFTgivsRAMTL 371
                     57899********************999999************999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     ev+s+g      galq+m++elq++splvp R+++fvRy++q+g+g+w++vdvS+d  ++ p      R++++pSg+li++++ng+skvtwvehv
  Cucsa.148430.1 372 EVLSTGvagnynGALQVMTSELQVPSPLVPtRESYFVRYCKQHGEGTWAVVDVSLDTLRPAPA----LRCRRRPSGCLIQEMPNGYSKVTWVEHV 462
                     ************************************************************995....**************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++r +h+l+++lv+sg+a+gak+w atl+rqce+
  Cucsa.148430.1 463 EVDDRGVHSLYNQLVSSGHAFGAKRWIATLDRQCER 498
                     **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-2163140IPR009057Homeodomain-like
SuperFamilySSF466895.43E-1968141IPR009057Homeodomain-like
PROSITE profilePS5007116.53682142IPR001356Homeobox domain
SMARTSM003892.2E-1883146IPR001356Homeobox domain
CDDcd000867.94E-1985143No hitNo description
PfamPF000462.9E-1785140IPR001356Homeobox domain
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PROSITE profilePS5084845.725269501IPR002913START domain
SuperFamilySSF559615.36E-34271500No hitNo description
CDDcd088751.34E-128273497No hitNo description
SMARTSM002341.1E-65278498IPR002913START domain
PfamPF018521.7E-59279498IPR002913START domain
Gene3DG3DSA:3.30.530.208.4E-6329480IPR023393START-like domain
SuperFamilySSF559611.24E-23518753No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MPAGMMIPAR NTASSMIGRN GNVGIFGSPA SLVLGQELQG IEMGENEYGR MRETEEFESG  60
TKSSSENHEV GSGDDQLNNQ RPNKKKRYHR HTQHQIQQME AFFKECPHPD DKQRKELSRE  120
LNLEPLQVKF WFQNKRTQMK THHERHENTQ LRTENEKLRA DNMRYREALS NATCPNCGGP  180
TAIGEMSFDE HHLRLENARL REEIDRISAI AAKYVGKPVS NYPLLSTPIP SRPLELGMGS  240
YGGHDLGLGP GGGDMFGAAD LLRTISAPSE ADKPVIIELA VAAMEELVRM AQMGEPLWMT  300
GVDGSTNELN EEEYVRSFPR GIGPKPSGFS CEASRATAVV IMNHISLVEM LMDVNQWSTT  360
FTGIVSRAMT LEVLSTGVAG NYNGALQVMT SELQVPSPLV PTRESYFVRY CKQHGEGTWA  420
VVDVSLDTLR PAPALRCRRR PSGCLIQEMP NGYSKVTWVE HVEVDDRGVH SLYNQLVSSG  480
HAFGAKRWIA TLDRQCERLA SAMATSIIPN GDAGVITNQE GRKSMLKLAE RMVMSFCGGV  540
SASTTHTWTT LSGTGADDVR VMTRKSVDDP GRPSGIVLSA ATSFWLPLPP NRVFHFLRDE  600
NSRNEWDILS NGGVVQEMAH IANGRDTGNC VSLLRVNSAN SSQSNMLILQ ESSTDQTASF  660
VIYAPVDIVS INVVLNGGDP DYVALLPSGF AILPDGSTAS SGGANGVGEH GSGGSLLTVA  720
FQILVDSVPT AKLSLGSVAT VNNLIACTVE RIKASLSCDN P*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004144488.10.0PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A0A0K2660.0A0A0A0K266_CUCSA; Uncharacterized protein
STRINGXP_004144488.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]