PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.148360.3

Common Name

Csa_7G044790, LOC101222960

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C3H

Protein Properties

Length: 392aa MW: 44857.6 Da PI: 6.7283

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.148360.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.4	4.3e-07	8	31	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +++ G+C++ ++C+FaHg Cucsa.148360.3 8 FKTKLCVLYQK-GYCSR-PSCSFAHG 31 69*******.*.*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	8.24E-5	5	36	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-9	6	37	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.117	7	33	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.3E-4	8	31	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MMVGRKLFKT KLCVLYQKGY CSRPSCSFAH GNAELRRFAA PSIGRTEYRG NDLRHKLDSR 60 HSPLQERDSR GRHVPREYSS SWSLERHSDR KRRKKEHGDA SRDYSGNLRI LDRNEEHDRQ 120 GKISSVSRDT LEGQLNKIQT DIEMAEQRKH QAEVYMDEKI QEVDSLTSRV QELESQLYKE 180 RQECRRIKSK IKKFVKAHNR HSRLQDELSR SQVRLQQLGD QLGSDVNKIG ANEEDSSINI 240 VSDGEDPGYH ASDPFHDLQR DTSASKRKMH DVQDIAENLK RANESRQRRG RTSSSVSSAD 300 KVRGLDSGVA VPLTSMAGHA VDEEVDIDLE INHEEKEPRE NSMEAASGSL PFLPPPPPPP 360 IREFSHSKYE GEDQNVDVEV VDEEKEYMDE A*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MMVGRKLFKT KLCVLYQKGY CSRPSCSFAH GNAELRRFAA PSIGRTEYRG NDLRHKLDSR  60
HSPLQERDSR GRHVPREYSS SWSLERHSDR KRRKKEHGDA SRDYSGNLRI LDRNEEHDRQ  120
GKISSVSRDT LEGQLNKIQT DIEMAEQRKH QAEVYMDEKI QEVDSLTSRV QELESQLYKE  180
RQECRRIKSK IKKFVKAHNR HSRLQDELSR SQVRLQQLGD QLGSDVNKIG ANEEDSSINI  240
VSDGEDPGYH ASDPFHDLQR DTSASKRKMH DVQDIAENLK RANESRQRRG RTSSSVSSAD  300
KVRGLDSGVA VPLTSMAGHA VDEEVDIDLE INHEEKEPRE NSMEAASGSL PFLPPPPPPP  360
IREFSHSKYE GEDQNVDVEV VDEEKEYMDE A*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	95	RKRRKKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681792	2e-97	LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBank	LN713255	2e-97	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011658709.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X4
TrEMBL	A0A0A0K3L6	0.0	A0A0A0K3L6_CUCSA; Uncharacterized protein
STRING	XP_008455411.1	0.0	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	2e-53	C3H family protein

Link Out ? help Back to Top
Phytozome	Cucsa.148360.3
Entrez Gene	101222960

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]