PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.148360.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 437aa    MW: 49905.3 Da    PI: 7.31
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.148360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.9e-07831126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    +kt+lC  +++ G+C++ ++C+FaHg
  Cucsa.148360.1  8 FKTKLCVLYQK-GYCSR-PSCSFAHG 31
                    69*********.*****.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.42E-5536IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-9637IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.117733IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-4831IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MMVGRKLFKT KLCVLYQKGY CSRPSCSFAH GNAELRRFAA PSIGRTEYRG NDLRHKLDSR  60
HSPLQERDSR GRHVPREYSS SWSLERHSDR KRRKKEHGDA SRDYSGNLRI LDRNEEHDRQ  120
GKISSVSRDT LEGQLNKIQT DIEMAEQRKH QAEVYMDEKI QEVDSLTSRV QELESQLYKE  180
RQECRRIKSK IKKFVKAHNR HSRLQDELSR SQVRLQQLGD QLGSDVNKIG ANEEDSSINI  240
VSDGEDPGYH ASDPFHDLQR DTSASKRKMH DVQDIAENLK RADLDKGNKE AVGRLRRNSR  300
WNAHPAKSTY SKIKMVGNEI NDLIPTANES RQRRGRTSSS VSSADKVRGL DSGVAVPLTS  360
MAGHAVDEEV DIDLEINHEE KEPRENSMEA ASGSLPFLPP PPPPPIREFS HSKYEGEDQN  420
VDVEVVDEEK EYMDEA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18995RKRRKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817921e-98LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132551e-98LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004144583.20.0PREDICTED: zinc finger CCCH domain-containing protein 40 isoform X1
TrEMBLA0A1S3C0E80.0A0A1S3C0E8_CUCME; zinc finger CCCH domain-containing protein 40 isoform X1
STRINGXP_008455411.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF974955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.14e-53C3H family protein