PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.148220.2
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 430aa    MW: 48497.3 Da    PI: 6.7211
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.148220.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS260.84.9e-80474102373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalkl.....fsev 87 
                     ++lL++c  a++s+d +laq++++ l++ asp gdp+qRl++ f++AL +r +r +++ + + +p++ s +     ++++l++  +     +++v
  Cucsa.148220.2  47 EKLLVHCGSALESHDVTLAQQVMWVLNNVASPVGDPNQRLTSWFLRALVSRASRVCPSPSPTPTPTPMSFNGssirVETRLMS--VtdlarYVDV 139
                     689***************************************************99888877777777655555553333333..134599**** PP

            GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl. 181
                      P+++f++ +aN aI++a+e+ ++vHi+Df+is+++QWp+L++aL++Rp+ pp l i             ++++g  L+kfA++ ++pf+fn++ 
  Cucsa.148220.2 140 IPWHRFGFCAANIAIYKAIERYQKVHILDFSISHCMQWPTLIDALSKRPQVPPLLNIP------------THQIGLCLTKFANSKNIPFQFNLFp 222
                     *******************************************************984............3679*******************99 PP

            GRAS 182 ....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                          ++ ++ ++++ L+++++Eal++n+++ l ++ d+       +++++++ k+l+P+++vvv+++ d++++s++ r++ +++y++  fd+le
  Cucsa.148220.2 223 ynhnNSNIISLFDPSILNLQHDEALVINCQHWLRYVSDD------DKNDFINATKRLNPRIMVVVDEDFDMTDSSLASRITTCFNYFWIPFDALE 311
                     876555567888*******************99999822......2458********************************************** PP

            GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                     + l+++s +r  +E+  +g++i+n++  eg++r+er e+  k +er++ +G+ + p+ +++ +++k+ll++ +  g+ ++ e+++lvl+Wk+++ 
  Cucsa.148220.2 312 TFLSKDSTQRLEYEAD-VGQRIENIIGFEGKQRVERLESCVKVSERMRYSGYLNQPFCDDVGDEVKALLAEQA-SGWGMKREEDALVLTWKGHNS 404
                     ****************.9*****************************************************99.88999999************* PP

            GRAS 368 vsvSaW 373
                     v+v+aW
  Cucsa.148220.2 405 VFVTAW 410
                     ****** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.33720392IPR005202Transcription factor GRAS
PfamPF035141.7E-7747410IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MRAELRGKTS SISVHNNSTI LNRADNSTSV YGALKGCLGS LDGGCIEKLL VHCGSALESH  60
DVTLAQQVMW VLNNVASPVG DPNQRLTSWF LRALVSRASR VCPSPSPTPT PTPMSFNGSS  120
IRVETRLMSV TDLARYVDVI PWHRFGFCAA NIAIYKAIER YQKVHILDFS ISHCMQWPTL  180
IDALSKRPQV PPLLNIPTHQ IGLCLTKFAN SKNIPFQFNL FPYNHNNSNI ISLFDPSILN  240
LQHDEALVIN CQHWLRYVSD DDKNDFINAT KRLNPRIMVV VDEDFDMTDS SLASRITTCF  300
NYFWIPFDAL ETFLSKDSTQ RLEYEADVGQ RIENIIGFEG KQRVERLESC VKVSERMRYS  360
GYLNQPFCDD VGDEVKALLA EQASGWGMKR EEDALVLTWK GHNSVFVTAW WSSINLLEAI  420
FRSTVCFLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B7e-534741034418Protein SHORT-ROOT
5b3h_E7e-534741034418Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004144576.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A0A0K3M70.0A0A0A0K3M7_CUCSA; Uncharacterized protein
STRINGXP_004144576.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-105GRAS family protein