PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.148090.1 | ||||||||
Common Name | Csa_7G045590, LOC101219416 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 29446.6 Da PI: 5.2078 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.4e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l+d+v+++G +W++ +++ g+ R++k+c++rw +yl Cucsa.148090.1 15 KGVWTPEEDQKLIDYVNKYGHWNWRRLPKYAGLLRCGKSCRLRWMNYL 62 799*****************99**********99************97 PP | |||||||
2 | Myb_DNA-binding | 48.6 | 1.8e-15 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ eE+e +++ +q Gg+ W+t a m+ gRt++++k++w+++l Cucsa.148090.1 68 RGGFSLEEEETIIQMYAQIGGR-WSTMAGVMP-GRTDNDIKNHWNTVL 113 7889******************.*********.************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.788 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.4E-29 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-14 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 17 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.18E-11 | 18 | 62 | No hit | No description |
SMART | SM00717 | 6.4E-13 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.707 | 67 | 117 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.7E-12 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.03E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MAKCCCCCDE TTVKKGVWTP EEDQKLIDYV NKYGHWNWRR LPKYAGLLRC GKSCRLRWMN 60 YLRPNIRRGG FSLEEEETII QMYAQIGGRW STMAGVMPGR TDNDIKNHWN TVLKRRVMKQ 120 QIENKKMLIK LANKQPLPPA TAAETNPIDH DVFSREIERS NNNSTLIMDP TAVEISEQIE 180 SIVESPTAGH YMDMELVDER LPESCTGDFW TDPLWMDNSF EMAFDNYQHQ GLGESINLLN 240 LGLDQYLLQE GIYL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-27 | 15 | 117 | 7 | 108 | B-MYB |
1h8a_C | 2e-27 | 15 | 117 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681792 | 0.0 | LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004144570.1 | 0.0 | PREDICTED: transcription factor WER-like | ||||
TrEMBL | A0A0A0K1Q0 | 0.0 | A0A0A0K1Q0_CUCSA; Uncharacterized protein | ||||
STRING | XP_004144570.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G05100.1 | 2e-54 | myb domain protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.148090.1 |
Entrez Gene | 101219416 |
Publications ? help Back to Top | |||
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