PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.146980.1 | ||||||||
Common Name | Csa_1G529120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 436aa MW: 48967.4 Da PI: 6.2555 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.9e-17 | 134 | 180 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l ++vkq+G + W+ Ia+++ gR +kqc++rw+++l Cucsa.146980.1 134 KGQWTEEEDRKLTRLVKQHGVRKWAQIAEKLE-GRAGKQCRERWHNHL 180 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 49.3 | 1.1e-15 | 186 | 228 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W++eE+ +lv+ +++ G++ W+ Ia+ ++ gRt++ +k++w+ Cucsa.146980.1 186 KESWSEEEERILVETHARVGNR-WAEIAKSIP-GRTENAIKNHWN 228 578*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.976 | 129 | 184 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.71E-30 | 131 | 227 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-16 | 133 | 182 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-28 | 135 | 188 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.5E-18 | 137 | 194 | No hit | No description |
CDD | cd00167 | 2.03E-15 | 137 | 180 | No hit | No description |
PROSITE profile | PS51294 | 19.775 | 185 | 235 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-14 | 185 | 233 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-20 | 189 | 233 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MHSNAPPPSA VPPLAAIDRF LYSHNVNGNN CFEKGLIGGL SPEICGGGSG GSGGEWIEVE 60 KRRRVEEKLE LGIEEDEEEE EEEEVTYGWG RKNNNNSEMG FKEMMIRSSN INEVKICSSK 120 FKKFKKRSSA NLIKGQWTEE EDRKLTRLVK QHGVRKWAQI AEKLEGRAGK QCRERWHNHL 180 RPDIKKESWS EEEERILVET HARVGNRWAE IAKSIPGRTE NAIKNHWNAT KRRQNSRRKN 240 KRPNSQNGKP HSSILQDYIK SKYNPAAVTT VPTSTFSDDP SSHFNHFFSE SSDSTSNLSS 300 AIISSPTYDD ELLFMQNFFS NSSDLLSLPS ADDGASMWNQ STVEFGSVDS ERKAERPKTG 360 DDGINVATSS HLCSDMYLSY LLNGTMNNSC GGGGEIQNMA ELQVMAAAGE GLWENSQQVK 420 KEMDLMEMLS FHCYP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-44 | 132 | 234 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-44 | 132 | 234 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 60 | 64 | KRRRV |
2 | 230 | 241 | KRRQNSRRKNKR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00567 | DAP | Transfer from AT5G58850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681926 | 0.0 | LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044. | |||
GenBank | LN713266 | 0.0 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008457563.1 | 0.0 | PREDICTED: protein ODORANT1 | ||||
TrEMBL | A0A0A0LVH8 | 0.0 | A0A0A0LVH8_CUCSA; Uncharacterized protein | ||||
STRING | XP_008457563.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4129 | 31 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 3e-64 | myb domain protein 119 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.146980.1 |
Publications ? help Back to Top | |||
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