PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.143360.1
Common NameCsa_1G613580, LOC101212860
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YA
Protein Properties Length: 270aa    MW: 29464.3 Da    PI: 7.3635
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.143360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.23.8e-30172228158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     ++p++VNaKQyq+Il+RRq+Rak+e+ekk  +k+rkpylheSRh+hA+rR R+sgGrF
  Cucsa.143360.1 172 QDPVFVNAKQYQGILRRRQARAKAEAEKKS-IKARKPYLHESRHQHAIRRSRSSGGRF 228
                     58***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-32170231IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115233.9171231IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.2E-26174228IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.1E-22174196IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860176196IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.1E-22205228IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MQSKSETNNQ LDSNGAPSTS IYYEPWWRGM GYNTFPLPVV GGNASSSTSL EFPNGGSESN  60
DGQSVSNNDV NDEEDDVSKE VQATGSPHSA GSYRQDPQKM QHVSSTLPAM HGECLAQSTQ  120
LELVGHSIAC ASNPYQDPYY GGMMAFYGHQ PLGYPMVGGP HARMPLPIEI AQDPVFVNAK  180
QYQGILRRRQ ARAKAEAEKK SIKARKPYLH ESRHQHAIRR SRSSGGRFAK KSEAEGKEKH  240
SDKVNESGYR LNDGSEQQNG SSLTNKASE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-17172228258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818071e-143LN681807.1 Cucumis melo genomic scaffold, anchoredscaffold00024.
GenBankLN7132561e-143LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139033.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
SwissprotQ9LXV52e-70NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A0A0M2S30.0A0A0A0M2S3_CUCSA; Uncharacterized protein
STRINGXP_004154628.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.41e-54nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  6. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]