PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.142970.2 | ||||||||
Common Name | Csa_1G605650, LOC101217148 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C3H | ||||||||
Protein Properties | Length: 236aa MW: 25040.3 Da PI: 9.158 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.6 | 6.7e-06 | 28 | 53 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f C++Gd+C +aHg+ Cucsa.142970.2 28 KTRLCNKFNSAEGCRFGDKCYYAHGE 53 8***********************96 PP | |||||||
2 | zf-CCCH | 26.8 | 8.9e-09 | 202 | 227 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +f + G C + +rC+FaHg+ Cucsa.142970.2 202 FKTKLCANFTK-GACTFRERCHFAHGE 227 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-12 | 24 | 57 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.55E-8 | 25 | 57 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.062 | 26 | 53 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.99 | 26 | 54 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 2.63E-14 | 90 | 171 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 4.9E-11 | 99 | 169 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 3.3E-14 | 99 | 170 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 13.355 | 100 | 164 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.61E-12 | 102 | 164 | No hit | No description |
Pfam | PF00013 | 2.2E-9 | 102 | 166 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 9.0E-15 | 200 | 233 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.68 | 201 | 228 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-5 | 201 | 227 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-8 | 201 | 231 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-5 | 202 | 227 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MISPALPPGI RNPAPPQSFP DGVPPAVKTR LCNKFNSAEG CRFGDKCYYA HGEWELGRPN 60 PPQDHGGMGP GPMQQPRMGG GWNAPPPPPN HGPAASFGAS ATAKISVDAS LAGPIIGKNG 120 VNSKNICRMT GARLSIKEHE SDPNLKNIEL EGTFDQINLA SSMVRELIAN VGAASANNAM 180 KQHQQHQHHS GMQQSSGSAN NFKTKLCANF TKGACTFRER CHFAHGESEL RKPGM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681806 | 0.0 | LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004149023.1 | 1e-174 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q69XQ3 | 7e-72 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A0A0M2L9 | 1e-173 | A0A0A0M2L9_CUCSA; Uncharacterized protein | ||||
STRING | XP_004149023.1 | 1e-174 | (Cucumis sativus) | ||||
STRING | XP_004161573.1 | 1e-174 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 6e-51 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.142970.2 |
Entrez Gene | 101217148 |
Publications ? help Back to Top | |||
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