PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.142970.1
Common NameCsa_1G605650, LOC101217148
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 309aa    MW: 32808 Da    PI: 9.3987
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.142970.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.6e-06101126227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+lC+ f     C++Gd+C +aHg+
  Cucsa.142970.1 101 KTRLCNKFNSAEGCRFGDKCYYAHGE 126
                     8***********************96 PP
2zf-CCCH26.31.3e-08275300127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC +f + G C + +rC+FaHg+
  Cucsa.142970.1 275 FKTKLCANFTK-GACTFRERCHFAHGE 300
                     69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.63764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.2113765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-63864IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-73962IPR000571Zinc finger, CCCH-type
PfamPF146080.574562No hitNo description
Gene3DG3DSA:4.10.1000.102.3E-1297130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-798130IPR000571Zinc finger, CCCH-type
SMARTSM003560.06299126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9999127IPR000571Zinc finger, CCCH-type
PfamPF146080.049105125No hitNo description
SuperFamilySSF547914.53E-14163244IPR004088K Homology domain, type 1
SMARTSM003224.9E-11172242IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.105.6E-14172243IPR004088K Homology domain, type 1
PROSITE profilePS5008413.355173237IPR004088K Homology domain, type 1
CDDcd001051.11E-11175237No hitNo description
PfamPF000133.6E-9175239IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.3E-14273306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-8274304IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5274300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.68274301IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-5275300IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDLDGARKRE RTETALNGNG GFKKSKPEMD SLSTGLGSKS RPCTKFFSTS GCPFGEGCHF  60
AHYVPGGVKS ISQMISPALP PGIRNPAPPQ SFPDGVPPAV KTRLCNKFNS AEGCRFGDKC  120
YYAHGEWELG RPNPPQDHGG MGPGPMQQPR MGGGWNAPPP PPNHGPAASF GASATAKISV  180
DASLAGPIIG KNGVNSKNIC RMTGARLSIK EHESDPNLKN IELEGTFDQI NLASSMVREL  240
IANVGAASAN NAMKQHQQHQ HHSGMQQSSG SANNFKTKLC ANFTKGACTF RERCHFAHGE  300
SELRKPGM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149023.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R07e-99C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0A0M2L90.0A0A0A0M2L9_CUCSA; Uncharacterized protein
STRINGXP_004149023.10.0(Cucumis sativus)
STRINGXP_004161573.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-49C3H family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]