PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.141640.1

Common Name

Csa_1G595880, LOC101207344

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GRF

Protein Properties

Length: 334aa MW: 37815.4 Da PI: 9.7874

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.141640.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.7	1.1e-24	76	119	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk+++ Cucsa.141640.1 76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVD 119 79***************************************986 PP
2	QLQ	59.3	1.1e-20	8	43	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT aQ+q+L++Q+l++Ky++++ P+PpeLl+ i++ Cucsa.141640.1 8 PFTSAQWQELEHQALIFKYMVSGIPIPPELLFSIKR 43 8*******************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	7.6E-13	7	43	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.3E-15	8	41	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.862	8	43	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.765	76	120	IPR014977	WRC domain
Pfam	PF08879	1.8E-20	77	118	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MSARSMFPFT SAQWQELEHQ ALIFKYMVSG IPIPPELLFS IKRSALDSPF TSKLFPHHPQ 60 PVGWNYLQMS LGRKIDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG KNRSRKPVDV 120 LKTTATNDIN HLSNPTFSSL NSNSSLLSYR PFPAHQISST PNNGNGISMK DTNTLLLLEP 180 GSYSDKNPDY RSRYTCGLKE EVNEKVFFSQ EPSEAIGRAD FSASSIASSL QLTPLTMSSS 240 LYPKQNNSSS LQSDQSSFYQ LHQNLTEPLK QQKRDESQKT VHRFFDEWPP KDRGSWLDFA 300 DKSSNTSSVS TTRLSISIPT ASNDFPIFRS KNP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681806	0.0	LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004144026.1	0.0	PREDICTED: growth-regulating factor 4-like
TrEMBL	A0A0A0LZJ1	0.0	A0A0A0LZJ1_CUCSA; Uncharacterized protein
STRING	XP_004144026.1	0.0	(Cucumis sativus)
STRING	XP_004161107.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4043	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-56	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Cucsa.141640.1
Entrez Gene	101207344

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]