PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.138780.1
Common NameCsa_6G190300, LOC101203568
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 535aa    MW: 59927.8 Da    PI: 5.025
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.138780.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS135.36.4e-423445141169
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cA+avss+d + a +lL++++++++ +gd  qR+ ++f++AL+ar+++++s+     ++ ++s+ + ++ l+a++++   +P+ k+s 
  Cucsa.138780.1 344 LRNLLILCAQAVSSDDRRIAYELLKQIRQHSATNGDGSQRMSHFFANALEARMVGNGSGSRLYYESLAQSNITAADMLKAYQVYLSSCPFKKLSL 438
                     6899**************************************************9655554445666666667********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169
                     +   ++Il+ +e+++ +H+iDf+i +G+ Wp L+q La+ p+gpp+lRiTg+++p +g   +e++ee g+rLak++
  Cucsa.138780.1 439 FFMIKMILKVAENAKSLHVIDFGICYGFLWPMLIQFLAQLPDGPPKLRITGIDRPLPGfrPAEKIEESGRRLAKYC 514
                     *******************************************************99999*************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.346318534IPR005202Transcription factor GRAS
PfamPF035142.2E-39344514IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MDPNLNYFPQ TPSTQFNDQT SYLYPELQNS FVFIDPSPNL VPFVENSFFP YKPDPSPAME  60
LKMAGGFPVV APGRSPGGDS SSDESDFKES VLKYISQMLM EENLEEMPCM FYDPLGLEVT  120
EKSFYDALGN TNNYPSSPNQ PPLLDCDSDP ASTNVSVGNS NSPDSQWVVD PGDYKSSILP  180
TPFLSNSHEL VNELLAQNIF SDSKSILQYQ KGLEEASKFL PVGNQLNIDL GSGMGTGVVS  240
KVMDTTEKDQ REKSPNGSKR RKSRERENVE LDSEEGRRNK QATIYTDEEE LSEMFDKVLL  300
HDCGNETTAN AGCENLQYNR QVHGSVTAKA REKKQEKRKD SVDLRNLLIL CAQAVSSDDR  360
RIAYELLKQI RQHSATNGDG SQRMSHFFAN ALEARMVGNG SGSRLYYESL AQSNITAADM  420
LKAYQVYLSS CPFKKLSLFF MIKMILKVAE NAKSLHVIDF GICYGFLWPM LIQFLAQLPD  480
GPPKLRITGI DRPLPGFRPA EKIEESGRRL AKYCLATYWM KLWKKVVQGM LFCV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-203335147182Protein SCARECROW
5b3h_D6e-203335147182Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819190.0LN681919.1 Cucumis melo genomic scaffold, anchoredscaffold00084.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143205.10.0PREDICTED: scarecrow-like protein 34
TrEMBLA0A0A0KE790.0A0A0A0KE79_CUCSA; Uncharacterized protein
STRINGXP_004163236.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.14e-99SCARECROW-like 14
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]