PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.135490.1
Common NameCsa_6G003450, LOC101203224
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family BES1
Protein Properties Length: 700aa    MW: 78428.2 Da    PI: 6.3339
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.135490.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822141.11e-43732111132
          DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl...eeaeaagssasas 89 
                     gg++r ++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL++eAGwvv +DGtt++   +g k+    ++a +  ss+ as
  Cucsa.135490.1  73 GGGRRCRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALATEAGWVVLPDGTTFPsrsQGIKHAgggSTAVTSSSSHLAS 167
                     68999****************************************************************98788889987644444555555588 PP

          DUF822  90 pesslq.sslkssalaspvesysaspksssfpspssldsislas 132
                     ++++++  + +s+ ++s  e  ++++k +  p +  +d  ++a 
  Cucsa.135490.1 168 QQTPSTsIRGVSCGFRSVPEYNACRMKGVFLPNSPPYDASPNAR 211
                     88877768899*********************999999887664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.0E-3774198IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.47E-177256692IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.804.5E-193259691IPR013781Glycoside hydrolase, catalytic domain
PfamPF013737.5E-101264684IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-67295309IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-67316334IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-67338359IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060342350IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008421.1E-5421430IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.4E-67431453IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-67504523IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-67538554IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-67555566IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.4E-67573596IPR001554Glycoside hydrolase, family 14
PRINTSPR008421.1E-5576586IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.4E-67613635IPR001554Glycoside hydrolase, family 14
PRINTSPR008421.1E-5664678IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008421.1E-5679693IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MATDMQKLIG TSEEDDDEDV EMDVKEEDDE EDDGARRIRS SLMVGDDGGM VSSGSNNNRF  60
EQHQVQEQVG TPGGGRRCRP LEEKERTKLR ERHRRAITAR ILAGLRRHGN YNLRVRADIN  120
DVIAALATEA GWVVLPDGTT FPSRSQGIKH AGGGSTAVTS SSSHLASQQT PSTSIRGVSC  180
GFRSVPEYNA CRMKGVFLPN SPPYDASPNA RCQSSSLMGD AGEQSAGHPL INSSVDAVDG  240
MQIVDTTPKL PERDFAGSAY IPVYVMLPLG VINMKCELVD PDGLLKQLRL LKSANVDGVM  300
VDCWWGIVEA HSPHEYNWNG YRRLFQMVHE LKLKLQVVLS FHECGGNVGD DVCIPLPHWV  360
AEIGRSNPDI FFTDREGRRN PECLSWGVDK ERVLRGRTGL EVYFDYMRSF RVEFNDFFED  420
GVITTIGVGL GPCGELRFPS FPVKHGWRYP GIGEFQCYDQ YLLKNLRKAA EARGHSFWAR  480
GPDNAGSYSS RPHETGFFCD GGDYDGYYGR FFLNWYSKVL VDHGDRVLYL AKLAFEGSRI  540
VAKLSGIHWW YKTASHAAEL TAGFYNPCNR DGYAAIMTML KKHSASLNFT PAEFHMLHQR  600
EDFSNSLSDP EAVVWQVTNA AWDVNVEVVS ENPLPFLDRV GYNKILDNAK PLADPDGRYL  660
SSFIYHRLSP LLLERQNFME FERFVKRMHG TALGRHFCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bya_A1e-15026069011443BETA-AMYLASE
1byb_A1e-15026069011443BETA-AMYLASE
1byc_A1e-15026069011443BETA-AMYLASE
1byd_A1e-15026069011443BETA-AMYLASE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819240.0LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656338.10.0PREDICTED: beta-amylase 7-like
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A0A0K8440.0A0A0A0K844_CUCSA; Beta-amylase
STRINGXP_004138591.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108833339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]