PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.134500.1

Common Name

Csa_1G057030, LOC101216422

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

FAR1

Protein Properties

Length: 856aa MW: 98227.1 Da PI: 8.3321

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.134500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.2	1.8e-25	67	176	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrtgCkaklkvkkekdgkw 76 +fY+eYAk++GFsv +++s++s+ +g++++++f C+k+g ++e+++ +++ r +r+ ++t+Cka+++vk+ ++g+w Cucsa.134500.1 67 SFYKEYAKSIGFSVITKASRRSRISGKFIDAKFACTKYGIKKESSSVvevsdpvtnsnngmgvagkKKRGRINRSWEKTDCKACMHVKRLQSGRW 161 5****************************************99889***********998888899******************* PP FAR1 77 evtkleleHnHelap 91 + ++ +eHnHe++p Cucsa.134500.1 162 AIRSFIKEHNHEVFP 176 **********875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-23	67	176	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-26	295	387	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.483	575	611	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.9E-6	582	607	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.7E-4	586	613	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 856 aa Download sequence Send to blast
MDNNSAQCDI DGSSHMVERD KTGPIVSIEM PEYMNIAYSQ NALNSRSVKI IEPHEGMEFE 60 SKENALSFYK EYAKSIGFSV ITKASRRSRI SGKFIDAKFA CTKYGIKKES SSVVEVSDPV 120 TNSNNGMGVA GKKKRGRINR SWEKTDCKAC MHVKRLQSGR WAIRSFIKEH NHEVFPNESH 180 YFRGHGNLEV GSSNTDVLQG NRARRKSKLC MKSRQSGGCT IANKQKVAVT DQVYKLQHLA 240 IDEGDVQVML DHFVCMQDEN PNFFYSIDLN EKQSLRNVLW VDAKGRLDYA SFADVVFFDT 300 TFIKNEYRLP FAPFIGVNHH FQFVLLGCSL VADETKSTYA WLMRAWLRAM QKCSPKVILT 360 VQDEALKEAI AEELPDSCHC YCLWDIYGKI PERLSHVIRQ DENFMLMFDE CVFRSWSIEL 420 FEKQWQTLVD RFELSHNSWF KSLYADRSRW IPAYMKNIFL AGISTRQRPE GINSFLDKYI 480 QRKTSVRELL DRYSTLIRDK FEEERKADFE TFHKQPALKS PSPFGKQMAA LYTQTVFKKF 540 QVEVLGVVAC HPKKESEDGV IKVFRVQDFE ESQDFLVEWN EATSDISCLC RSFEFNGYLC 600 RHVMIVLQIS GIHSIPSQYV LTRWTRKAKS IQKTRKGSNV ESRVQRYINL YQQAFRLSDE 660 GSLSHESYNV AFNALEEASR KCESLSGSIQ PSPVVHSSHE SEEVNQDKKT NKAHKKNTTT 720 NESRQDRFEP HVVTIGNHFG WQQLGQSNSQ TPALHCPDEH EGLQGAEQRS RRAPSLESCF 780 GDQQQLMHGM HGMEQFNSIT SVTDSRFQVQ RMEGHLNFRP NIVSNCFDLQ VGPRDMNPST 840 AGSTKVHSIS SKQFK*

Sequence ? help Back to Top

Protein Sequence Length: 856 aa Download sequence Send to blast

MDNNSAQCDI DGSSHMVERD KTGPIVSIEM PEYMNIAYSQ NALNSRSVKI IEPHEGMEFE  60
SKENALSFYK EYAKSIGFSV ITKASRRSRI SGKFIDAKFA CTKYGIKKES SSVVEVSDPV  120
TNSNNGMGVA GKKKRGRINR SWEKTDCKAC MHVKRLQSGR WAIRSFIKEH NHEVFPNESH  180
YFRGHGNLEV GSSNTDVLQG NRARRKSKLC MKSRQSGGCT IANKQKVAVT DQVYKLQHLA  240
IDEGDVQVML DHFVCMQDEN PNFFYSIDLN EKQSLRNVLW VDAKGRLDYA SFADVVFFDT  300
TFIKNEYRLP FAPFIGVNHH FQFVLLGCSL VADETKSTYA WLMRAWLRAM QKCSPKVILT  360
VQDEALKEAI AEELPDSCHC YCLWDIYGKI PERLSHVIRQ DENFMLMFDE CVFRSWSIEL  420
FEKQWQTLVD RFELSHNSWF KSLYADRSRW IPAYMKNIFL AGISTRQRPE GINSFLDKYI  480
QRKTSVRELL DRYSTLIRDK FEEERKADFE TFHKQPALKS PSPFGKQMAA LYTQTVFKKF  540
QVEVLGVVAC HPKKESEDGV IKVFRVQDFE ESQDFLVEWN EATSDISCLC RSFEFNGYLC  600
RHVMIVLQIS GIHSIPSQYV LTRWTRKAKS IQKTRKGSNV ESRVQRYINL YQQAFRLSDE  660
GSLSHESYNV AFNALEEASR KCESLSGSIQ PSPVVHSSHE SEEVNQDKKT NKAHKKNTTT  720
NESRQDRFEP HVVTIGNHFG WQQLGQSNSQ TPALHCPDEH EGLQGAEQRS RRAPSLESCF  780
GDQQQLMHGM HGMEQFNSIT SVTDSRFQVQ RMEGHLNFRP NIVSNCFDLQ VGPRDMNPST  840
AGSTKVHSIS SKQFK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011652421.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 1 isoform X1
Refseq	XP_011652425.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 1 isoform X1
TrEMBL	A0A0A0LUL2	0.0	A0A0A0LUL2_CUCSA; Uncharacterized protein
STRING	XP_004153044.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Cucsa.134500.1
Entrez Gene	101216422

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]