PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.132590.2
Common NameCsa_2G008740, LOC101203718
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family G2-like
Protein Properties Length: 603aa    MW: 65825.8 Da    PI: 6.2611
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.132590.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.22.1e-24113169155
         G2-like   1 kprlrW...tpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W    ++LH++Fv av+ L G ekA+Pk+il+lm+v+gLt+e+v+SHLQkYR 
  Cucsa.132590.2 113 KPRVNWydgDENLHRKFVAAVNIL-GYEKAVPKKILDLMNVEGLTRENVASHLQKYRQ 169
                     789999444479************.********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011015.791143IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.71E-7343No hitNo description
SuperFamilySSF521725.12E-9351IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.2E-11356No hitNo description
Gene3DG3DSA:1.10.10.602.0E-24111173IPR009057Homeodomain-like
SuperFamilySSF466895.73E-15111173IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-21113169IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MLVVLSAHSN TELVKKGVLH GACDYLLKPV RIEELKNIWQ HVLRRKKPSV KNQNKSIIGN  60
NTSQSVEVAK GCPPAVSTDN EKSGKRQKDQ DDDEEGGEED STYENDDSST QKKPRVNWYD  120
GDENLHRKFV AAVNILGYEK AVPKKILDLM NVEGLTRENV ASHLQKYRQY LKKLCSEESE  180
QCNKMGAFGG THTSFRPMAS LDGFSMTGTG RLSNATFSQY PSREIVGQLN STAGLSLNDI  240
ASSGMIQSHK LSNSLSFIGK PHPPFFHTNQ PPHTFNGISM SLDHIQLHRD KRTLSFKESN  300
LINDASSFTV STSFPDAGRA VGSSSNYDFG VSSHSLMLRE HKQQIHGDGE FGGQSSLKIT  360
LDNREPLDSG TSVSNILGHS QSNKNWPGSI QLPKFSSNVS VTGIYPPDGM PGTYLTISSA  420
QPDNDNFPVG FPSTSGDSSS HLDLRGDTQC YEELIGSVVE ATNGRSKQQW EAAKQDYYGN  480
HSSVVRDSFV SGNSVADPLI QSANQNNAIC LGNMSSSSTN QLNIGAPTFI HDGVEISTMN  540
TWMNYDGKIP MDQTKLQHGF SSSSFNSLDE LVNALSKQDQ DQSIQINGEF GFDAQSLGSS  600
CI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-21109174163ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004139402.10.0PREDICTED: two-component response regulator ARR12
RefseqXP_011648717.10.0PREDICTED: two-component response regulator ARR12
TrEMBLA0A0A0LI680.0A0A0A0LI68_CUCSA; Uncharacterized protein
STRINGXP_004159429.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.13e-50response regulator 12
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]