PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.132590.1 | ||||||||
Common Name | Csa_2G008740, LOC101203718 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARR-B | ||||||||
Protein Properties | Length: 700aa MW: 76945.7 Da PI: 5.7786 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 76.9 | 2.5e-24 | 210 | 266 | 1 | 55 |
G2-like 1 kprlrW...tpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W ++LH++Fv av+ L G ekA+Pk+il+lm+v+gLt+e+v+SHLQkYR Cucsa.132590.1 210 KPRVNWydgDENLHRKFVAAVNIL-GYEKAVPKKILDLMNVEGLTRENVASHLQKYRQ 266 789999444479************.********************************6 PP | |||||||
2 | Response_reg | 82.9 | 1e-27 | 26 | 134 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+p+ +++l+++l+k +y +v+++ ++ +al++l+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++ e++++ + G Cucsa.132590.1 26 VLAVDDDPICLKVLENLLRKCQY-HVTTTNQAVQALKMLRENKnrFDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSNTELVKKGVLHG 118 799********************.***************888888*******************87754.558********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +eel + Cucsa.132590.1 119 ACDYLLKPVRIEELKN 134 *************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 4.5E-149 | 1 | 699 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.0E-42 | 23 | 153 | No hit | No description |
SuperFamily | SSF52172 | 9.53E-37 | 23 | 148 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 4.8E-34 | 24 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 44.366 | 25 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.1E-25 | 26 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.97E-30 | 27 | 140 | No hit | No description |
SuperFamily | SSF46689 | 6.99E-15 | 208 | 270 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-24 | 208 | 270 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-21 | 210 | 266 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence Send to blast |
MTVEVRKTNL VGENDDMEQF PIGMRVLAVD DDPICLKVLE NLLRKCQYHV TTTNQAVQAL 60 KMLRENKNRF DLVISDVNMP DMDGFKLLEL VGLEMDLPVI MLSAHSNTEL VKKGVLHGAC 120 DYLLKPVRIE ELKNIWQHVL RRKKPSVKNQ NKSIIGNNTS QSVEVAKGCP PAVSTDNEKS 180 GKRQKDQDDD EEGGEEDSTY ENDDSSTQKK PRVNWYDGDE NLHRKFVAAV NILGYEKAVP 240 KKILDLMNVE GLTRENVASH LQKYRQYLKK LCSEESEQCN KMGAFGGTHT SFRPMASLDG 300 FSMTGTGRLS NATFSQYPSR EIVGQLNSTA GLSLNDIASS GMIQSHKLSN SLSFIGKPHP 360 PFFHTNQPPH TFNGISMSLD HIQLHRDKRT LSFKESNLIN DASSFTVSTS FPDAGRAVGS 420 SSNYDFGVSS HSLMLREHKQ QIHGDGEFGG QSSLKITLDN REPLDSGTSV SNILGHSQSN 480 KNWPGSIQLP KFSSNVSVTG IYPPDGMPGT YLTISSAQPD NDNFPVGFPS TSGDSSSHLD 540 LRGDTQCYEE LIGSVVEATN GRSKQQWEAA KQDYYGNHSS VVRDSFVSGN SVADPLIQSA 600 NQNNAICLGN MSSSSTNQLN IGAPTFIHDG VEISTMNTWM NYDGKIPMDQ TKLQHGFSSS 660 SFNSLDELVN ALSKQDQDQS IQINGEFGFD AQSLGSSCI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 6e-21 | 206 | 271 | 1 | 63 | ARR10-B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681847 | 0.0 | LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003. | |||
GenBank | LN713259 | 0.0 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004139402.1 | 0.0 | PREDICTED: two-component response regulator ARR12 | ||||
Refseq | XP_011648717.1 | 0.0 | PREDICTED: two-component response regulator ARR12 | ||||
TrEMBL | A0A0A0LI68 | 0.0 | A0A0A0LI68_CUCSA; Uncharacterized protein | ||||
STRING | XP_004159429.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-106 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.132590.1 |
Entrez Gene | 101203718 |
Publications ? help Back to Top | |||
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