PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.131250.5
Common NameCsa_1G118880, LOC101213992
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 464aa    MW: 51784.7 Da    PI: 8.4133
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.131250.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.6e-08341389348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v ++G g+W+ I r       +Rt  ++k++w+++l
   Cucsa.131250.5 341 SWTLSEVMKLVEGVSEYGVGRWTEIKRLQFassSHRTSVDLKDKWRNLL 389
                      5***********************9876558999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-12334391IPR009057Homeodomain-like
PROSITE profilePS5129413.318334393IPR017930Myb domain
SuperFamilySSF466898.61E-16336399IPR009057Homeodomain-like
SMARTSM007175.3E-9338391IPR001005SANT/Myb domain
PfamPF002492.9E-6341389IPR001005SANT/Myb domain
CDDcd116608.65E-19342390No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MSFLIVLDFN TFHSHKCLGI EHFSFAVDFD QIKIDSESLH SSLTLEGERT KQEGHDDKLR  60
ADDVCSGINK HPGAVNSRTT DDIFNLAPAS SNASFLGNVD FGSYSQGFST TDIGVDLSFA  120
GGHNVAFDQK EGKHMISSST GSSGCSGSTT ACLDDENMSD DRPMKRKRLS SSDSLKTNFE  180
HSESKINPFS EGNRGDTLVT EKRLRKPPRR YSEESVEQKS RSNSKKSALK ASKDKSFHSE  240
SHKQQWQKKV KAAPIVHKDK SFNGGCIQVP FGLPIEEGHS AKKRTCWEPE EIKDNRILCI  300
KDKYEVESFS AESEDENTED ECATKGNSTQ KGNSRRKHHI SWTLSEVMKL VEGVSEYGVG  360
RWTEIKRLQF ASSSHRTSVD LKDKWRNLLK ASDTQLQNRR KVVLGRKQAS QQVPESVLCR  420
VRELAAIYPY PRENKSKESC SAPSTSSFKS TTNNMFVSLP TVM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819280.0LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011653900.10.0PREDICTED: telomere repeat-binding protein 1-like isoform X2
TrEMBLA0A0A0LV100.0A0A0A0LV10_CUCSA; Uncharacterized protein
STRINGXP_004139439.10.0(Cucumis sativus)
STRINGXP_004165015.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-28TRF-like 6
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]