PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.131250.1

Common Name

Csa_1G118880, LOC101213992

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MYB_related

Protein Properties

Length: 518aa MW: 57797.2 Da PI: 7.1009

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.131250.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.5	6.5e-08	394	442	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v ++G g+W+ I r +Rt ++k++w+++l Cucsa.131250.1 394 SWTLSEVMKLVEGVSEYGVGRWTEIKRLQFassSHRTSVDLKDKWRNLL 442 5*********************9876558999***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.318	387	446	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-11	387	444	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.29E-15	389	451	IPR009057	Homeodomain-like
SMART	SM00717	5.3E-9	391	444	IPR001005	SANT/Myb domain
Pfam	PF00249	3.4E-6	394	442	IPR001005	SANT/Myb domain
CDD	cd11660	4.94E-19	395	443	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MNAASKETMM TSNQATKLFT YEFPDVDSDL SIFPVPEDDV LGVEHFLEPD FNKCFSGSVL 60 DFNTFHSHKC LGIEHFSFAV DFDQIKIDSE SLHSSLTLEG ERTKQEGHDD KLRADDVCSG 120 INKHPGAVNS RTTDDIFNLA PASSNASFLG NVDFGSYSQG FSTTDIGVDL SFAGGHNVAF 180 DQKEGKHMIS SSTGSSGCSG STTACLDDEN MSDDRPMKRK RLSSSDSLKT NFEHSESKIN 240 PFSEGNRGDT LVTEKRLRKP PRRYSEESVE QKSRSNSKKS ALKASKDKSF HSESHKQQWQ 300 KKVKAAPIVH KDKSFNGGCI QVPFGLPIEE GHSAKKRTCW EPEEIKDNRI LCIKDKYEVE 360 SFSAESEDEN TEDECATKGN STQKGNSRRK HHISWTLSEV MKLVEGVSEY GVGRWTEIKR 420 LQFASSSHRT SVDLKDKWRN LLKASDTQLQ NRRKQVVLGR KQASQQVPES VLCRVRELAA 480 IYPYPRENKS KESCSAPSTS SFKSTTNNMF VSLPTVM*

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MNAASKETMM TSNQATKLFT YEFPDVDSDL SIFPVPEDDV LGVEHFLEPD FNKCFSGSVL  60
DFNTFHSHKC LGIEHFSFAV DFDQIKIDSE SLHSSLTLEG ERTKQEGHDD KLRADDVCSG  120
INKHPGAVNS RTTDDIFNLA PASSNASFLG NVDFGSYSQG FSTTDIGVDL SFAGGHNVAF  180
DQKEGKHMIS SSTGSSGCSG STTACLDDEN MSDDRPMKRK RLSSSDSLKT NFEHSESKIN  240
PFSEGNRGDT LVTEKRLRKP PRRYSEESVE QKSRSNSKKS ALKASKDKSF HSESHKQQWQ  300
KKVKAAPIVH KDKSFNGGCI QVPFGLPIEE GHSAKKRTCW EPEEIKDNRI LCIKDKYEVE  360
SFSAESEDEN TEDECATKGN STQKGNSRRK HHISWTLSEV MKLVEGVSEY GVGRWTEIKR  420
LQFASSSHRT SVDLKDKWRN LLKASDTQLQ NRRKQVVLGR KQASQQVPES VLCRVRELAA  480
IYPYPRENKS KESCSAPSTS SFKSTTNNMF VSLPTVM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681928	0.0	LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004139439.1	0.0	PREDICTED: uncharacterized protein LOC101213992 isoform X1
TrEMBL	A0A0A0LV10	0.0	A0A0A0LV10_CUCSA; Uncharacterized protein
STRING	XP_004139439.1	0.0	(Cucumis sativus)
STRING	XP_004165015.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15018	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	2e-28	TRF-like 6

Link Out ? help Back to Top
Phytozome	Cucsa.131250.1
Entrez Gene	101213992

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]