PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.130050.1

Common Name

Csa_4G312300

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 307aa MW: 34686.6 Da PI: 8.4544

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.130050.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	4.2e-32	70	123	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rFv+ave+LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+ Cucsa.130050.1 70 PRLRWTPDLHLRFVHAVERLGGQENATPKLVLQLMNIKGLSIAHVKSHLQMYRS 123 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.791	66	126	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-29	66	124	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.12E-15	69	126	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-22	70	125	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-9	71	122	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MEVVGECSNT RSSDVDDNSN KKSENSSSST EFGNEGSSSN STIEENNNND HDQHKTKPPT 60 VRPYVRSKLP RLRWTPDLHL RFVHAVERLG GQENATPKLV LQLMNIKGLS IAHVKSHLQM 120 YRSKKTNEPG QVVGDQRVLM AESNNGDRNI FNVSQIPMFQ RYNSSYPSNL FRFGGSSWKA 180 IENKTIQSPF MEKSASMTTL TQARSSLFSS NKSNAPEMIN RNLRMSISES NTTTSKRQDE 240 REKEDSCSEI IPQKRKRATD NGEIDLSLSL KIAPREEIKI EKRSIDQDEE VLESRTDLSL 300 SLCSYY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-17	71	125	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-17	71	125	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-17	71	125	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-17	71	125	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-17	71	125	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681884	1e-171	LN681884.1 Cucumis melo genomic scaffold, anchoredscaffold00086.
GenBank	LN713262	1e-171	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011653702.1	0.0	PREDICTED: probable transcription factor KAN4
Refseq	XP_011653703.1	0.0	PREDICTED: probable transcription factor KAN4
TrEMBL	A0A0A0L1D1	0.0	A0A0A0L1D1_CUCSA; Uncharacterized protein
STRING	XP_008464217.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2378	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	3e-50	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.130050.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]