PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.128620.2 | ||||||||
Common Name | Csa_7G413890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 210aa MW: 24290.6 Da PI: 9.5051 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.4e-18 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd l ++v+ +G g+W+++ar+ g++Rt+k+c++rw++yl Cucsa.128620.2 27 KGPWTAEEDSVLFNYVNCHGEGRWNAVARCTGLKRTGKSCRLRWLNYL 74 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.6 | 4e-15 | 80 | 123 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Cucsa.128620.2 80 RGNITLQEQLLILELHFRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 123 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.141 | 22 | 78 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.43E-31 | 24 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-14 | 26 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-16 | 27 | 74 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-22 | 28 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.69E-11 | 29 | 74 | No hit | No description |
PROSITE profile | PS51294 | 17.209 | 79 | 129 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-13 | 79 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-14 | 80 | 123 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-21 | 82 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.81E-7 | 100 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MDVKMRGFRC GEPQKIKEEE EEMDVRKGPW TAEEDSVLFN YVNCHGEGRW NAVARCTGLK 60 RTGKSCRLRW LNYLRPSVRR GNITLQEQLL ILELHFRWGN RWSKIAQYLP GRTDNEIKNY 120 WRTRVQKQAK QLNCDVNSKQ FRDAMRYVWM PRLLERIQAS TDSTTTIVDV IQPPHPPLEL 180 TQSSPSGSSW VNPHVAPTTS SSDSISDQV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-25 | 24 | 129 | 4 | 108 | B-MYB |
1h8a_C | 6e-25 | 24 | 129 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ036901 | 0.0 | FJ036901.1 Cucumis sativus clone CU20C06 myb-like transcription factor Myb5 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004136147.2 | 1e-156 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q2QZJ8 | 5e-81 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | A0A0A0K5V3 | 1e-151 | A0A0A0K5V3_CUCSA; Uncharacterized protein | ||||
TrEMBL | A0A1S3CEB9 | 1e-151 | A0A1S3CEB9_CUCME; transcription factor MYB108-like | ||||
STRING | XP_008461407.1 | 1e-152 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 4e-76 | myb domain protein 78 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.128620.2 |