PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.127860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 223aa MW: 25461.5 Da PI: 8.5968 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.8 | 1.4e-14 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ede+l ++ G g+W+ Iar g+ R++k+c++rw +yl Cucsa.127860.1 18 KGLWSPDEDEKLMRYMLSNGQGCWTDIARNAGLLRCGKSCRLRWINYL 65 678*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 4.9e-16 | 71 | 115 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E++l+++ + +lG++ W+ Ia++++ gRt++++k++w++ Cucsa.127860.1 71 RGAFSPQEEQLILHFHSLLGNR-WSQIAARLP-GRTDNEIKNFWNST 115 89********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.147 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.5E-28 | 15 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-11 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-13 | 18 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 19 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.90E-9 | 21 | 65 | No hit | No description |
PROSITE profile | PS51294 | 24.973 | 66 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-15 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-15 | 71 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-26 | 73 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.88E-11 | 73 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MRKPGDCSTA AANIRLRKGL WSPDEDEKLM RYMLSNGQGC WTDIARNAGL LRCGKSCRLR 60 WINYLRPDLK RGAFSPQEEQ LILHFHSLLG NRWSQIAARL PGRTDNEIKN FWNSTLKKRM 120 KNNRNYNITP SPNLSHSSEP RSSNNSFGEQ PSSFEPLLFS TLSNDNYQLF NMFDDGGSGG 180 GVTEQGYFGD YTTTTILEAK DFYDYSHLPP HGNKDIIIEE INK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-28 | 16 | 120 | 5 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00336 | DAP | Transfer from AT3G08500 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681804 | 1e-133 | LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060. | |||
GenBank | LN713255 | 1e-133 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004136117.1 | 1e-163 | PREDICTED: transcription factor MYB46 | ||||
TrEMBL | A0A1S3CED2 | 1e-134 | A0A1S3CED2_CUCME; transcription factor MYB46 | ||||
STRING | XP_004158238.1 | 1e-165 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF774 | 34 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08500.1 | 1e-69 | myb domain protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.127860.1 |