PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.127480.1
Common NameCsa_6G502710, LOC101220687
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ZF-HD
Protein Properties Length: 338aa    MW: 37727.3 Da    PI: 8.6978
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.127480.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.23.5e-32130185359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                      +rY+eClkNhAas+Ggh++DGCgEfmp+ ge+gt +a+kCaAC+CHRnFHR+e+++
  Cucsa.127480.1 130 VIRYRECLKNHAASTGGHVLDGCGEFMPN-GENGTFEAMKCAACECHRNFHRKEMKD 185
                     689*************************8.999********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-21130183IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.4E-29131183IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-28132183IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.032133182IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.2E-28266335IPR009057Homeodomain-like
SuperFamilySSF466898.48E-19272334IPR009057Homeodomain-like
TIGRFAMsTIGR015651.9E-27273330IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
METRSEDEEI GTPNSPLCYN NPSSNRESST KLPNADNPFL SAADRRRDHT VPQLHFSTHQ  60
KLTLHHIHKQ HTRDHPEATP DPPIQPSISA SPPSSAATPT PLPIAGTSSR LISRTPSFAG  120
ATDNNIPSSV IRYRECLKNH AASTGGHVLD GCGEFMPNGE NGTFEAMKCA ACECHRNFHR  180
KEMKDDPPFQ QALPSGFFIS NSIRNNGHRT ERTPVVPVSR HHQLPAVPIS SMMMAFGGSN  240
GAPDESSSED LNMYHPSNNG ARDLFGQQTQ LIKKRFRTKF TQGQKDKMEE FAEKLGWKIQ  300
KHDELEVQQF CAEVGVRRQV FKVWMHNNKQ AMKKKQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-252743291873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143516.10.0PREDICTED: zinc-finger homeodomain protein 2
RefseqXP_004143517.10.0PREDICTED: zinc-finger homeodomain protein 2
RefseqXP_011658011.10.0PREDICTED: zinc-finger homeodomain protein 2
RefseqXP_011658012.10.0PREDICTED: zinc-finger homeodomain protein 2
RefseqXP_011658013.10.0PREDICTED: zinc-finger homeodomain protein 2
SwissprotQ9ZPW72e-63ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A0A0KH030.0A0A0A0KH03_CUCSA; Uncharacterized protein
STRINGXP_004162318.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.14e-65homeobox protein 24
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]