PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.127390.1
Common NameCsa_6G502620, LOC101218550
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 610aa    MW: 66641.9 Da    PI: 4.5835
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.127390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.94.5e-1112416092374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++L+ecA+ +s+++  +a ++L +l+e +s++gdp++R+a+yf+ AL +rl+   ++ ++ +++++t    s++ + ++k++++++P+ kf+hl
  Cucsa.127390.1 241 LKTLIECAR-ISESEPDRAAQTLIKLKESSSEHGDPTERVAFYFMDALCRRLSL--PSDSRLISCEST----SDDFTLSYKALNDACPYSKFAHL 328
                     689*****9.77788999999999****************************98..666666677766....58999****************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     taNqaIle++e+++++HiiDf+i qG+QW+aLlqaLa+R+ g+p  +Ri g+ +p  g   ++ l +tg+rLa+fA+ l+++fef++ + + +e+
  Cucsa.127390.1 329 TANQAILESTENASKIHIIDFGIAQGVQWAALLQALATRSTGKPtGIRISGIPAPMLGscPATGLFATGNRLAEFAKLLELNFEFDP-ILTPIEE 422
                     ****************************************776659********9999999**************************.799**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ ++++++++E+laVn++lql++llde+        +vL+l ksl+Pk+v++ e ea++n+  Fl+rf +al++ysa+f+sl+ klpr+s+er 
  Cucsa.127390.1 423 LNESSFQIDTHETLAVNFMLQLYNLLDETPRAVL---NVLQLAKSLNPKIVTLGEYEASLNRVGFLNRFKNALRHYSAVFESLDPKLPRDSNERL 514
                     **************************99998888...9********************************************************* PP

            GRAS 284 kvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                      +E+ llgr+i  +v  e +   ++er+e +e+W++ +e++GF++v+ls++a +qak ll k++ s +y++ e+s  ++ l W++ p+++vS+Wr
  Cucsa.127390.1 515 HLEKLLLGRQIGGLVGPESSPgsKTERMEDKEEWKKLMENSGFESVNLSHYAKSQAKILLWKYDySSEYSLMESSPGFLsLAWNEVPIITVSSWR 609
                     ****************99986669****************************************9999****99998888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.573214587IPR005202Transcription factor GRAS
PfamPF035141.5E-108241609IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MANMCADSGN LMAIAQQVMK QKQQQEQQQQ HPQHQPQQLT GPCTFGLNPW SASNHALSGA  60
PDLGFGLTGA GFPDPFQVQR VVDGGETSFQ FPNLEHHSPA FRFSDFDGGA AAEFDSDEWM  120
ESLMAGGDST DSSNLPSGCD AWQSNSDFAF YAADPFVPCP SRLPIPCSSP SDLNRVIFPD  180
PPKSEPAVEP PVVSWTGIPP ATPSAVVKDT QIPNPPLAVL KSEDNGGSSS SADTESTPPL  240
LKTLIECARI SESEPDRAAQ TLIKLKESSS EHGDPTERVA FYFMDALCRR LSLPSDSRLI  300
SCESTSDDFT LSYKALNDAC PYSKFAHLTA NQAILESTEN ASKIHIIDFG IAQGVQWAAL  360
LQALATRSTG KPTGIRISGI PAPMLGSCPA TGLFATGNRL AEFAKLLELN FEFDPILTPI  420
EELNESSFQI DTHETLAVNF MLQLYNLLDE TPRAVLNVLQ LAKSLNPKIV TLGEYEASLN  480
RVGFLNRFKN ALRHYSAVFE SLDPKLPRDS NERLHLEKLL LGRQIGGLVG PESSPGSKTE  540
RMEDKEEWKK LMENSGFESV NLSHYAKSQA KILLWKYDYS SEYSLMESSP GFLSLAWNEV  600
PIITVSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1452396093375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143507.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A0A0KJ340.0A0A0A0KJ34_CUCSA; Chitin-inducible gibberellin-responsive protein
STRINGXP_004143507.10.0(Cucumis sativus)
STRINGXP_004170737.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]