PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.127020.1 | ||||||||
Common Name | Csa_1G077150, LOC105435209 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TCP | ||||||||
Protein Properties | Length: 125aa MW: 13529.2 Da PI: 10.9417 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 87.9 | 2.3e-27 | 24 | 110 | 10 | 97 |
TCP 10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaaks 97 k++T++g+R RR Rlsa++a++f+dLqd+LG ++ ++i+WLl +ak ai++l + ++ ++c ++s s + +sss+++++s+ +s Cucsa.127020.1 24 KVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLLNAKSAIDALSRPLQTEDNDCRKQSFSLPVPSSSSSSSSSSS-SS 110 9*******************************************************77777778333333333322222222111.11 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 21.581 | 15 | 76 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.6E-24 | 24 | 119 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
NTTKIARRNR RLSSTADAGA GVGKVYTSKG LRARRLRLSA PTAIKFYDLQ DRLGCGRPTE 60 AIDWLLLNAK SAIDALSRPL QTEDNDCRKQ SFSLPVPSSS SSSSSSSSSS QFQSYPLQNF 120 SQKV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-16 | 24 | 76 | 2 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-16 | 24 | 76 | 2 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681932 | 1e-106 | LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001. | |||
GenBank | LN713266 | 1e-106 | LN713266.1 Cucumis melo genomic chromosome, chr_12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011653401.1 | 2e-82 | PREDICTED: transcription factor PCF8-like | ||||
TrEMBL | A0A0A0LUP1 | 4e-81 | A0A0A0LUP1_CUCSA; Uncharacterized protein | ||||
STRING | XP_008443015.1 | 7e-52 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 2e-20 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.127020.1 |
Entrez Gene | 105435209 |
Publications ? help Back to Top | |||
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